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  3. RAFL11-05-H15

RAFL11-05-H15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12414)

full reading [+] show sequence

Nucleotide sequence: RAFL11-05-H15 - full reading 
GAGACAAACC AAAAAAAAGC CTAAAAAGCC GACCTTTTTT CTTTCTTTCT 
CTCCTCTACC TCTCAGCTTC TGCTGGATCT CTCCAGCAGA CACGATCTTG 
TTCGGAGAGA TTCGTAGGGG ACCGATCTAT CAAGGCTTCA AGGGCAAACA 
GAAATGGACC ACGACAAGAC AGGATGCCAA AGCCCACCTG AAGGTCCCAA 
GCTATGTACT AACAACTGCG GTTTCTTTGG AAGCGCTGCC ACAATGAACA 
TGTGTTCTAA GTGTCACAAG GATATGTTGT TCCAACAGGA GCAGGGCACT 
AAGTTTGCAT CTGCAGTGTC TGGAACATCG TCATCCAGCA ACATCATAAA 
GGAAACCTTT ACCGCTGCGT TGGTCGATAT TGAAACCAAA TCCGTTGAGC 
CGATGACTGT TTCTGTACAG CCATCCTCTG TCCAAGTCGT TGCAGAGGTA 
GTAGCACCAG AAGAAGCTGC GAAACCAAAG GGACCAAGCC GATGTACTAC 
TTGCAATAAG CGGGTTGGCC TGACTGGATT CAAATGTCGC TGTGGGAGCC 
TCTTCTGCGG AACACACCGC TATGCAGACG TACATGACTG CTCCTTCAAT 
TACCATGCTG CTGCGCAAGA GGCGATAGCT AAGGCAAACC CGGTTGTGAA 
AGCAGAGAAG CTTGACAAAA TCTGAAAATC TAAGTAAACT TCTCTGGTTT 
CATCAGGTGG CCTGGTGTTT CCTTCTCCTG TCTGTGTCTG GTTCAAGTAT 
TCTCATGTTA AAAAGGTTTT ATATAAGGTC GAATGAAAGC GTGCTTGATC 
TTTAGCGTCT TCCATCTCTC TGTGGTGTGG AACTTTCTAT TATCTGTGTT 
TGCAAGCAGA GAAACGTGCT CTTAAAAAAA ATGCTTTGTG TGTTTATCTT 
TCTACTATTT TTGAGCACTG TGTTATTGTT TCCTGTTTGG TCTGTATCAT 
ATTGAGATTG TCTCTGTAGC TACATGAAGC TTATTTAAAA AGGCCTGTGT 
TTGTCCTTCA ATCAGTGATT CCTTTCAATT TC

Gene models with high sequence identity

  1. AT1G51200.1 [+] show detail - A20/AN1-like zinc finger family protein
    E-value: 0; Score: 99.90

 

InterPro Scan Digest

Program Description E-value
HMMPfam Zinc finger, A20-type 0.000000000013
HMMPfam Zinc finger, AN1-type 0.000000000078
ProfileScan Zinc finger, A20-type 9.802
ProfileScan Zinc finger, AN1-type 11.917
HMMPanther PVPR3 PROTEIN 2.2e-96
HMMPanther PRK1-ASSOCIATED ZINC FINGER PROTEIN 2.2e-96
Gene3D Zinc finger, AN1-type 9.2e-26
HMMSmart Zinc finger, A20-type 0.000000085
HMMSmart Zinc finger, AN1-type 0.000000000000045

See the detailed result >

AT1G51200.1

Model type
Protein coding
Short Description
A20/AN1-like zinc finger family protein
Computational Description
A20/AN1-like zinc finger family protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, AN1-type (InterPro:IPR000058), Zinc finger, A20-type (InterPro:IPR002653); BEST Arabidopsis thaliana protein match is: A20/AN1-like zinc finger family protein (TAIR:AT2G36320.1); Has 1055 Blast hits to 1034 proteins in 151 species: Archae - 0; Bacteria - 0; Metazoa - 447; Fungi - 9; Plants - 481; Viruses - 6; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-05-H15 introduced

  • F00837 - Specific phenotypes were NOT observed.
  • F14234 - Specific phenotypes were NOT observed.
  • F24017 - Specific phenotypes were NOT observed.
  • F25704 - Specific phenotypes were NOT observed.
  • F28949 - Specific phenotypes were NOT observed.
  • F30021 - Specific phenotypes were NOT observed.
  • F30424 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found