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RAFL11-06-B02

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda07064)

full reading [+] show sequence

Nucleotide sequence: RAFL11-06-B02 - full reading 
AAACCCTAAA AATTCACGCA TTTTGGCACA GTTAAGTTCG CTGAATCCCG 
TTCCTCTTCC TCTGACTCTC TCCCCAAGAA AATCACTCAG ATCAAAGCTC 
AAATTTCGGA TCTCACAGCT GTCGCTTCGA GGAAAGGATG ACCAGAGAAC 
ATCCTCCCGA GCCTCTTGAT TTCTTCATCT GGACTGTTGA GGATGTTGGG 
TCTTGGCTCG AGGAGATAAA CCTTGGGGGC TACCGCCAGA TTTTCAAAGA 
AAATGGTGTC AATGGAGAAT ATCTAGAAAG CATGTCTGTG TTTACTACCG 
AGCAGATCCT TCACTTCATA AGGAGGCATC ACATGAAGTG GGGAGACTTC 
ATCACCCTCT GTAAAGAACT CAGAAGGATT AAAGTGGCTT GCTTGAAAGG 
TGAGCAGAGA GTTAGACGGC CATGGTGGGC ACCGTCTTGT CTATCCGTAG 
TCTTTGTTAA GGCAGCCAAA CGCAACCGAC AGTCTCGTGT TGTATCTCTC 
AAGCTTGAAT CTTGACATTA CACTTTGGCT GTTTATGTAC GTACTTGTCT 
CTCTTCTCTT CTCTTGTTTT CTTTTCCTTT TTTTTTTTTT TTTGGTTTGG 
GTTTGTTTGT GGCACATGCA CTAGGAAGAA ACAAACTCAA GTCAAAAAAG 
CTGTTTGGCT TGGTGAAATC TTGCAAGCGG GAAAAAAATT ATGCGTTTTG 
TACTTTGGTG GTGTATACAA AGCTTGCTCT CAGATGTTTA ATATATGGCT 
TGT

Gene models with high sequence identity

  1. AT3G07760.2 [+] show detail - Sterile alpha motif (SAM) domain-containing protein
    E-value: 0; Score: 99.73

 

InterPro Scan Digest

Program Description E-value
superfamily Sterile alpha motif homology 1.8e-14
ProfileScan Sterile alpha motif 11.501
Coil coiled-coil 0
HMMPfam Sterile alpha motif, type 2 1.2e-07

See the detailed result >

AT3G07760.2

Model type
Protein coding
Short Description
Sterile alpha motif (SAM) domain-containing protein
Computational Description
Sterile alpha motif (SAM) domain-containing protein; CONTAINS InterPro DOMAIN/s: Sterile alpha motif (InterPro:IPR001660), Sterile alpha motif homology (InterPro:IPR010993), Sterile alpha motif, type 2 (InterPro:IPR011510); Has 60 Blast hits to 60 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 5; Fungi - 6; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-06-B02 introduced

  • F16007 - Specific phenotypes were NOT observed.
  • F23833 - Specific phenotypes were NOT observed.
  • F24627 - rosette leaf::epinastic / rosette leaf::present in greater numbers in organism

Mutant lines with disrupted or induced

3 mutant lines found