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  3. RAFL11-06-D23

RAFL11-06-D23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda10080)

full reading [+] show sequence

Nucleotide sequence: RAFL11-06-D23 - full reading 
AAAAACATAT TGTTTAACAT TCCTAAATAA ATGAAAATCA AACATATCAT 
AGAAATTTAA TAAAATAAAT GGCACCAACT CAAAACACAA TCTGTTCGAA 
ACACGTGGCA GTGATTGGAG CCGGAGCTGC CGGTCTCGTA ACGGCTAGGG 
AACTTCGTCG TGAAGGTCAC ACTGTCGTTG TCTTTGACCG GGAAAAACAA 
GTGGGAGGTC TCTGGAACTA CTCATCTAAA GCTGACTCTG ACCCGCTTAG 
CCTCGACACA ACCCGAACCA TAGTCCACAC GAGCATCTAC GAGTCTCTCC 
GAACCAACCT CCCGAGAGAA TGTATGGGTT TTACGGACTT TCCTTTCGTG 
CCACGCATTC ATGACATCTC GAGAGACTCG AGACGGTATC CGAGTCACAG 
AGAAGTTCTT GCGTATCTTC AAGACTTTGC TAGAGAGTTT AAAATAGAGG 
AGATGGTCCG GTTCGAGACA GAGGTGGTTT GTGTTGAGCC GGTTAACGGG 
AAATGGAGTG TCCGGTCCAA GAATTCCGTT GGTTTCGCCG CCCATGAAAT 
CTTTGATGCC GTCGTTGTTT GTAGTGGTCA CTTTACAGAA CCTAACGTTG 
CTCATATTCC TGGGATAAAA TCGTGGCCAG GAAAGCAGAT CCATAGCCAC 
AACTACAGAG TTCCTGGTCC ATTCAATAAC GAGGTAGTGG TGGTGATCGG 
AAATTATGCG AGCGGTGCTG ATATTAGTAG GGATATAGCT AAGGTCGCGA 
AAGAAGTTCA CATTGCCTCT AGAGCGAGTG AATCTGATAC GTACCAGAAG 
CTTCCAGTGC CCCAAAACAA TCTATGGGTT CATTCCGAGA TAGACTTCGC 
CCATCAGGAT GGATCCATTC TTTTCAAAAA TGGGAAGGTG GTATATGCTG 
ATACCATTGT GCATTGCACT GGGTACAAAT ATTACTTTCC ATTTCTTGAA 
ACCAATGGCT ATATAAACAT TAATGAAAAC CGCGTCGAAC CTCTATACAA 
GCATGTCTTT CTACCCGCGC TAGCCCCCAG TCTTTCTTTC ATCGGTTTAC 
CTGGAATGGC CATACAATTC GTTATGTTTG AAATTCAAAG CAAATGGGTG 
GCTGCAGTCT TGTCCGGACG AGTTATACTT CCCTCGCAAG ACAAGATGAT 
GGAAGATATT ATTGAGTGGT ATGCAACGCT TGATGTGTTA GGAATTCCCA 
AAAGACATAC GCATAAATTG GGTAAAATTT CGTGTGAGTA CCTCAACTGG 
ATCGCGGAAG AATGTCATTG TTCGCCAGTT GAAAATTGGA GAATTCAAGA 
AGTTGAGCGT GGATTCCAGA GAATGGTCTC CCACCCAGAA ATTTACCGCG 
ATGAATGGGA TGATGATGAT CTTATGGAAG AAGCGTACAA GGATTTTGCT 
AGGAAGAAGT TAATTAGTTC TCATCCTTCT TATTTCCTCG AATCATGATG 
ATGATCTGCG ACAAATATTG TCCAAAAATT AAAAATCGCT TGTTTCGTTC 
TTTCT

Gene models with high sequence identity

  1. AT1G65860.1 [+] show detail - flavin-monooxygenase glucosinolate S-oxygenase 1
    E-value: 0; Score: 99.93

 

InterPro Scan Digest

Program Description E-value
HMMPanther PTHR23023:SF4 0
Gene3D G3DSA:3.50.50.60 6.19996040581158e-98
HMMPanther PTHR23023 0
HMMPfam Flavin-containing monooxygenase-like 6.19999999999994e-36
HMMPfam Flavin-containing monooxygenase-like 0.00000000000063
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
FPrintScan Flavin-containing monooxygenase FMO 8.80000265836278e-23
superfamily SSF51905 7.5e-49

See the detailed result >

AT1G65860.1

Model type
Protein coding
Short Description
flavin-monooxygenase glucosinolate S-oxygenase 1
Curator Summary
belongs to the flavin-monooxygenase (FMO) family, encodes a glucosinolate S-oxygenase that catalyzes the conversion of methylthioalkyl glucosinolates to methylsulfinylalkyl glucosinolates
Computational Description
flavin-monooxygenase glucosinolate S-oxygenase 1 (FMO GS-OX1); CONTAINS InterPro DOMAIN/s: Flavin-containing monooxygenase FMO (InterPro:IPR000960), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: flavin-monooxygenase glucosinolate S-oxygenase 2 (TAIR:AT1G62540.1); Has 13357 Blast hits to 12951 proteins in 1760 species: Archae - 39; Bacteria - 7207; Metazoa - 1086; Fungi - 1434; Plants - 770; Viruses - 0; Other Eukaryotes - 2821 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-06-D23 introduced

  • F04138 - Specific phenotypes were NOT observed.
  • F08114 - Specific phenotypes were NOT observed.
  • F08920 - Specific phenotypes were NOT observed.
  • F09533 - Specific phenotypes were NOT observed.
  • F20335 - Specific phenotypes were NOT observed.
  • F20917 - Specific phenotypes were NOT observed.
  • F23736 - Specific phenotypes were NOT observed.
  • F24015 - Specific phenotypes were NOT observed.
  • F24638 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / rosette leaf::abnormal / whole plant::decreased height
  • F26415 - Specific phenotypes were NOT observed.
  • F30210 - seed::increased size

Mutant lines with disrupted or induced

12 mutant lines found