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RAFL11-09-L22

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12425)

full reading [+] show sequence

Nucleotide sequence: RAFL11-09-L22 - full reading 
AGAAACAATT GATCAGAGCT TTAAAGAAAA AGATGGAATT CACCGCAGAG 
CAGCTAAGCC AATACAACGG CACCGACGAA TCAAAGCCGA TCTACGTCGC 
AATCAAAGGC CGTGTGTTCG ATGTCACCAC CGGAAAATCC TTCTACGGCT 
CCGGAGGCGA TTACTCGATG TTCGCCGGAA AAGACGCGAG CAGAGCTTTG 
GGTAAGATGA GTAAGAACGA AGAAGATGTG TCTCCTTCTC TTGAAGGTCT 
CACTGAGAAA GAGATCAATA CTCTTAATGA TTGGGAGACC AAATTTGAAG 
CTAAGTATCC TGTCGTTGGC CGTGTTGTCT CTTAGGTCTC TCTTCTGAGA 
TTGCACTATG TTATGTAACT ATTGTGTGTG AGGATCTTTG TGTTGTGTGT 
TTTCTGATTT CGTGTTTGGA TCTGATCGTT TTGATACAAT TACCATAAGT 
ACCAAATTAT CTATGAAATA AATCGGGGAT TTCGTGT

Gene models with high sequence identity

  1. AT2G24940.1 [+] show detail - membrane-associated progesterone binding protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily Cytochrome b5 5.2e-35
HMMPanther STEROID BINDING PROTEIN 1.6e-57
HMMPanther MEMBRANE ASSOCIATED PROGESTERONE RECEPTOR-REL 1.6e-57
Gene3D Cytochrome b5 2.4e-35
Coil coiled-coil 0
HMMPfam Cytochrome b5 3.3e-16

See the detailed result >

AT2G24940.1

Model type
Protein coding
Short Description
membrane-associated progesterone binding protein 2
Computational Description
membrane-associated progesterone binding protein 2 (MAPR2); FUNCTIONS IN: heme binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: male gametophyte, cultured cell, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: Cytochrome b5 (InterPro:IPR001199); BEST Arabidopsis thaliana protein match is: membrane steroid binding protein 1 (TAIR:AT5G52240.2); Has 1117 Blast hits to 1108 proteins in 214 species: Archae - 2; Bacteria - 37; Metazoa - 426; Fungi - 339; Plants - 201; Viruses - 0; Other Eukaryotes - 112 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-09-L22 introduced

  • F24706 - stem::increased thickness / stem::abnormal
  • F25122 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found