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RAFL11-10-L18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09196)

full reading [+] show sequence

Nucleotide sequence: RAFL11-10-L18 - full reading 
TGAGGGTTTC AAGTGAAAAG AGTAATAGCG CGGCGGAGCC ATGGTTCTCA 
AGACTGAGCT TTGCCGATTC AGTGGCCAGA AAATTTACCC TGGTAGAGGG 
ATCAGATTTA TCCGATCGGA CTCTCAGGTG TTTTTGTTTC TCAACTCCAA 
ATGTAAGAGG TATTTCCACA ACAAGTTGAA GCCATCTAAG CTTTGCTGGA 
CTGCTATGTA CCGAAAGCAG CACAAGAAGG ACGCAGCACA AGAGGCTGTG 
AAGAGAAGGA GACGTGCAAC TAAGAAGCCT TACTCAAGGT CGATTGTCGG 
TGCTACTTTG GAGGTTATTC AGAAGAAGCG AGCAGAGAAG CCTGAAGTTC 
GTGATGCCGC TAGAGAAGCT GCCCTACGTG AGATCAAGGA GAGAATCAAG 
AAGACCAAGG ACGAGAAGAA GGCAAAGAAG GTCGAGTATG CATCAAAGCA 
ACAGAAGTCA CAAGTGAAGG GAAATATCCC CAAGAGTGCT GCACCCAAGG 
CTGCTAAGAT GGGTGGTGGT GGAGGCAGAC GTTGAATGGA GCTATAGAGT 
AGCCCACTCT TCTCTCTTCA CTTATCTTTC TTTCTTGTTT TGACATTGTT 
TTGTTTTGTC AGCCATTTTT TAGTTTTGCA CCAGATCTAA TATATTCAGT 
TTATGAAAAC TTTTTGTTTG GTAT

Gene models with high sequence identity

  1. AT2G36620.1 [+] show detail - ribosomal protein L24
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Ribosomal protein L24e 5.5e-20
PatternScan Ribosomal protein L24e 0
superfamily Glucocorticoid receptor-like (DNA-binding dom 2.3e-18
HMMPanther 60S RIBOSOMAL PROTEIN L24 1.8e-80
HMMPanther Ribosomal protein L24e 1.8e-80
HMMSmart TRASH 0.00000038
Coil coiled-coil 0
HMMPfam Ribosomal protein L24e 6.4e-37

See the detailed result >

AT2G36620.1

Model type
Protein coding
Short Description
ribosomal protein L24
Curator Summary
RPL24A encodes ribosomal protein L24, homolog of cytosolic RPL24, found in archaea and higher eukaryotes. Arabidopsis has two RPL24 homologs, RPL24A (AT2G36620) and RPL24B (AT3G53020).
Computational Description
ribosomal protein L24 (RPL24A); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation, ribosome biogenesis; LOCATED IN: ribosome, cytosolic large ribosomal subunit, plasma membrane, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L24e (InterPro:IPR000988); BEST Arabidopsis thaliana protein match is: Ribosomal protein L24e family protein (TAIR:AT3G53020.1); Has 1480 Blast hits to 1465 proteins in 352 species: Archae - 106; Bacteria - 37; Metazoa - 463; Fungi - 306; Plants - 338; Viruses - 0; Other Eukaryotes - 230 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-10-L18 introduced

  • F00113 - Specific phenotypes were NOT observed.
  • F06732 - Specific phenotypes were NOT observed.
  • F24912 - rosette leaf::increased size / rosette leaf::increased length / rosette leaf::increased width / rosette leaf::abnormal / stem::abnormal / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / stem::abnormal

Mutant lines with disrupted or induced

3 mutant lines found