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  3. RAFL11-11-C06

RAFL11-11-C06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda09199)

full reading [+] show sequence

Nucleotide sequence: RAFL11-11-C06 - full reading 
CTGCCTTAAA AATAAATCAC AGTCTCGCTC GCGTCTTTCC TCAAACCTCT 
CTGTCTCTTC TTCTTCCTCG CCTCGTCTAC GCAATAATAC TACTCTTATA 
TCACAAAATC TCCACGAAAG CGCTACTCGA AGATCTGTCT TTTCAGGTCG 
TTTATGTATT TTCTCTTGAA GGAAGAGATT AGCCACTAAT ACAAAATGTC 
TGGGTCAACA AAAGTATTGG ATCCTGCGTT TCAAGGAGTG GGGCAGAAAC 
CAGGTACTGA AATCTGGAGA ATCGAAAATT TTGAGCCAGT CCCAGTACCA 
AAGTCTGAAC ATGGAAAGTT CTATATGGGA GATACCTACA TTGTCTTGCA 
GACCACACAG AATAAGGGTG GCGCTTATCT ATTTGATATA CATTTTTGGA 
TTGGTAAAGA TACAAGCCAG GATGAAGCTG GAACAGCAGC TGTCAAGACA 
GTTGAACTTG ATGCAGCTCT TGGAGGCCGA GCTGTCCAAT ATCGTGAAAT 
TCAAGGTCAT GAATCTGACA AATTCTTGTC TTACTTCAAG CCTTGCATTA 
TACCACTAGA GGGTGGTGTT GCGTCTGGAT TTAAAAAACC GGAGGAGGAG 
GAGTTTGAAA CCCGGCTGTA TACCTGCAAA GGAAAACGTG CTGTCCACTT 
GAAGCAGGTT CCTTTTGCAC GCTCATCTCT GAATCATGAT GATGTGTTTA 
TCTTGGACAC CAAGGAAAAG ATTTATCAGT TTAATGGTGC AAATTCAAAT 
ATCCAAGAGA GAGCTAAAGC GTTGGTAGTC ATTCAATATT TGAAAGACAA 
GTTTCATGAA GGAACTTCTG ACGTTGCTAT TGTTGATGAT GGAAAATTAG 
ATACAGAATC AGATTCTGGC GAGTTCTGGG TCCTCTTTGG GGGGTTTGCT 
CCAATAGCAA GGAAAGTTGC GAGTGAGGAT GAAATTATTC CGGAGACAAC 
TCCGCCTAAG CTTTATAGTA TCGCTGATGG TCAGGTGGAA TCTATAGACG 
GCGATTTGTC CAAATCTATG CTAGAAAACA ATAAATGCTA CCTTTTGGAC 
TGCGGTTCTG AGATCTTTAT CTGGGTTGGC CGAGTAACTC AAGTGGAAGA 
GAGAAAAACT GCTATCCAAG CTGCTGAGGA TTTTGTTGCT AGTGAAAATA 
GGCCAAAGGC AACACGCATA ACCCGTGTTA TTCAAGGTTA TGAGCCCCAT 
TCTTTCAAGT CTAACTTTGA CTCTTGGCCA TCAGGCTCGG CAACTCCTGC 
TAATGAAGAA GGACGAGGAA AAGTCGCTGC ATTACTTAAG CAACAAGGTG 
TTGGGTTAAA GGGCCTGTCA AAAAGCACAC CAGTGAATGA GGATATTCCA 
CCATTGCTTG AAGGAGGTGG AAAGTTGGAG GTTTGGTACA TTGATGCCAA 
CTCCAAGACT GTTCTATCCA AAGATCATGT CGGAAAACTT TATTCTGGGG 
ACTGCTATCT GGTCCTTTAT ACCTACCATT CTGGTGAAAG GAAAGAAGAC 
TACTTCTTGT GCTGTTGGTT TGGAAAGAAT AGTAATCAGG AGGATCAAGA 
AACAGCAGTT CGTCTAGCGA GCACAATGAC AAATTCGTTG AAGGGAAGAC 
CAGTGCAGGC CCGTATATTT GAGGGTAAAG AGCCTCCACA ATTTGTTGCA 
CTTTTTCAAC ATATGGTTGT CCTTAAGGGC GGTTTGAGCT CTGGTTACAA 
AAATAGTATG ACAGAGAAAG GTTCGTCAGG CGAAACCTAC ACGCCGGAAT 
CAATTGCACT TATTCAAGTA TCTGGAACTG GAGTTCACAA TAATAAGGCT 
CTACAAGTTG AAGCGGTGGC AACTTCTTTG AACTCCTATG ACTGCTTCCT 
TCTGCAATCG GGTACTTCCA TGTTCCTTTG GGTTGGAAAC CATAGTACGC 
ATGAGCAGCA GGAACTGGCT GCTAAAGTTG CTGAATTCTT AAAGTCAGCC 
TGGGACTACT ATCAAGCACG CAAAAGAGGG AACAGAGAGC TCATCCTTTT 
GGTTTGCACT TGGGGGAAAA CAGAACTTCA CCAGCAAGAA AGTTTCCTCT 
GAGACTGTCA GGGATCCTCA CTTGTTCTCC TTTTCCTTCA ACAGAGGAAA 
GTTTCAGGTT GAAGAGATTC ACAACTTTGA TCAAGATGAC CTCTTGACGG 
AGGAAATGCA TTTACTAGAT ACTCATGCTG AAGTTTTTGT CTGGGTTGGT 
CAATGTGTGG ACCCTAAGGA AAAACAAACT GCCTTTGAGA TTGGCCAAAG 
ATACATAAAT CTGGCTGGTT CGCTGGAAGG CTTGTCTCCA AAAGTTCCAT 
TATACAAAAT CACTGAGGGA AATGAACCGT GCTTCTTCAC CACTTATTTT 
TCATGGGATT CTACTAAAGC TACTGTGCAA GGGAATTCCT ACCAGAAGAA 
GGCAGCATTA TTACTTGGTA CACACCACGT TGTGGAGGAT CAGTCTAGCA 
GTGGGAACCA AGGACCAAGG CAAAGAGCTG CTGCTTTAGC TGCCTTGACT 
TCTGCCTTTA ATTCTTCTTC TGGGAGAACA AGCTCTCCGA GCCGAGACAG 
ATCAAATGGA AGTCAAGGGG GTCCAAGACA AAGGGCTGAA GCTTTAGCCG 
CCTTAACATC CGCATTCAAT TCTTCACCAT CATCAAAGTC ACCTCCCCGA 
AGATCAGGAT TGACAAGCCA GGCGTCACAA AGAGCAGCAG CAGTGGCTGC 
TCTTTCCCAA GTTCTCACTG CTGAGAAGAA GAAATCACCT GATACCAGCC 
CTTCTGCTGA AGCAAAAGAT GAGAAGGCTT TCTCAGAAGT GGAGGCTACC 
GAAGAAGCTA CTGAAGCCAA GGAAGAAGAG GAAGTGTCAC CTGCAGCAGA 
AGCGAGTGCT GAGGAAGCAA AACCAAAGCA GGATGATTCT GAAGTAGAAA 
CAACTGGAGT AACTTTCACC TACGAACGAC TACAAGCCAA ATCTGAGAAA 
CCCGTGACAG GGATTGACTT CAAACGCAGA GAGGCTTACC TGTCTGAGGT 
AGAGTTCAAG ACTGTATTTG GGATGGAGAA AGAATCATTC TACAAATTGC 
CTGGATGGAA ACAAGACTTA CTGAAGAAGA AATTCAACTT ATTCTAAGGA 
TTCTCCAAAA AAAATTAGCA GGTGGAAACA TCACAAACAT CCTTAGATCT 
CATGATCCTC CATGTCAGAT ATATACTAAG AGCAACATGC CATTGTGTTA 
TTTGGTTATG TAGTGACCTC AGCGCCGCAG CTATGAAGAC AATGAACAGT 
TTCTTGTGTT TTTCTTCCTT CAATTTTACT CTTTTATTGT TTTGGTTTTT 
CAATATATTT CTTCTTTCTC ATGGGTGGGT TTTGGGTTTG ATTCTTCATA 
TTCTTAACCA CAAAATGGTG TGTTATTGTA ATGATTGTTT TTTTGTCAAA 
CATGCGTTCA TTTTTTGGGT CAGGACAGTT GTGTGGTGGT GGGTAGTAAA 
TTCTTTGATC TGGATTGCAC ATTATTTTGA TTGTGTAAAA GAACAGTGTC 
TACATGTAAA CTCATGAAAT TTCAATATAT TGGTGTTGGA TTCGTTTG

Gene models with high sequence identity

  1. AT3G57410.1 [+] show detail - villin 3
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Villin headpiece 19.938
HMMPfam Gelsolin domain 8.5e-16
HMMPfam Gelsolin domain 5e-10
HMMPfam Gelsolin domain 2e-14
HMMPfam Gelsolin domain 2.6e-11
HMMPfam Gelsolin domain 1.9e-08
HMMPfam Villin headpiece 1.4e-16
HMMPfam Gelsolin domain 0.00011
Gene3D no description 1.6e-46
Gene3D no description 3.3e-23
Gene3D no description 6.9e-23
Gene3D no description 9.6e-39
Gene3D no description 2.8e-12
Gene3D no description 1.5e-21
Gene3D Villin headpiece 1.5e-16
Coil coiled-coil 0
HMMSmart Gelsolin 1.5e-25
HMMSmart Gelsolin 2.8e-24
HMMSmart Gelsolin 6.6e-25
HMMSmart Gelsolin 2.6e-18
HMMSmart Gelsolin 1.2e-05
HMMSmart Gelsolin 6.2e-18
HMMSmart Villin headpiece 6.2e-18
superfamily Actin depolymerizing proteins 2.9e-33
superfamily Actin depolymerizing proteins 5.9e-27
superfamily Actin depolymerizing proteins 7.3e-27
superfamily Actin depolymerizing proteins 2.4e-23
superfamily Actin depolymerizing proteins 2.8e-15
superfamily Actin depolymerizing proteins 1.4e-24
superfamily Villin headpiece 4.5e-22
HMMPanther VILLIN 1-4 1.4e-143
HMMPanther Gelsolin 1.4e-143
HMMPanther VILLIN 1-4 0
HMMPanther Gelsolin 0
FPrintScan Gelsolin 3.3e-33
FPrintScan Gelsolin 3.3e-33
FPrintScan Gelsolin 3.3e-33
FPrintScan Gelsolin 3.3e-33
FPrintScan Gelsolin 3.3e-33
FPrintScan Gelsolin 3.4e-17
FPrintScan Gelsolin 3.4e-17
FPrintScan Gelsolin 3.4e-17

See the detailed result >

AT3G57410.1

Model type
Protein coding
Short Description
villin 3
Curator Summary
Encodes a protein with high homology to animal villin. VLN3 is a Ca2+-regulated villin involved in actin filament bundling.
Computational Description
villin 3 (VLN3); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin 2 (TAIR:AT2G41740.1); Has 7542 Blast hits to 2948 proteins in 413 species: Archae - 0; Bacteria - 496; Metazoa - 2427; Fungi - 350; Plants - 307; Viruses - 25; Other Eukaryotes - 3937 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-11-C06 introduced

  • F14221 - seed::increased size / seed::increased length
  • F24230 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found