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  3. RAFL11-11-H16

RAFL11-11-H16

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda17989)

full reading [+] show sequence

Nucleotide sequence: RAFL11-11-H16 - full reading 
GGAGGAGAAA CCAAAATATA CACAAAGTTA GAGAAAAAAA GAAGAGAAAA 
GGAGTTATAT ATGGATTGTA TTTTACTTAT TCTGACTACT CTTGTTGCCA 
TTTTCATCGT CAAGATTGTT CTCCTAGTCA CTAAACCTAA CAAAAACCTT 
CCACCGTCGC CAAATATATG TTTTCCGATC ATCGGACACC TTCACCTCCT 
CAAAAAGCCA CTGCTACACC GGACTCTCAG CCATCTCTCC CACTCCCTCG 
GCCCCGTCTT TTCTCTACGC CTCGGCTCTC GCCTTGCCGT TATCATCTCA 
TCTCCAACGG CAGCCGAAGA ATGCTTCTTG ACGAAAAACG ACATCGTTTT 
AGCAAATCGG CCTCGTTTCA TCATGGGCAA GTATGTGCCT TATGACTACA 
CCTCCATGGT TACGGCTCCT TACGGTGACC ACTGGCGAAA CCTCCGTCGT 
ATCACCGCTT TAGAAGTCTT CTCCACAAAT CGACTCAACG CTTCAGCGGA 
AATCCGACAT GACGAAGTTA AGATGCTTCT CCAAAAGCTT CACGATTTAT 
CTGTCGAACG CCCGGCTAAA GTGGAGTTAC GACAGTTACT AACGGGTCTT 
ACCCTAAATG TGATAATGAG AATGATGACC GGAAAGAGAT TCTTCGAGGA 
AGATGATGGC GGAAAGGCGG GGATAAGTTT GGAGTTCCGG GAACTAGTGG 
CGGAGATTCT AGAGCTCTCT GCGGCGGACA ATCCAGCTGA TTTTTTGCCG 
GCTCTACGGT GGTTTGACTA CAAAGGTTTG GTCAAGAGAG CAAAGAGGAT 
TGGAGAAAGG ATGGATAGTT TATTACAAGG GTTTTTGGAT GAGCATAGAG 
CTAACAAAGA CAGATTGGAG TTTAAGAACA CCATGATTGC TCATTTACTT 
GATTCTCAAG AAAAAGAGCC TCATAACTAC AGTGATCAAA CCATCAAAGG 
TCTTATACTG ATGGTAGTAG GAGGCACAGA TACATCGGCC TTAACCGTGG 
AATGGGCAAT GTCAAATTTA TTGAATCATC CACAAATACT AGAGACCACG 
AGACAAAACA TTGATACTCA AATGGAAACA TCAAGTAGTC GTCGTTTGTT 
GAAAGAAGAA GATTTGGTAA ACATGAACTA CTTGAAAAAT GTTGTGTCGG 
AGACACTAAG ACTTTACCCT GTGGCACCAC TTATGGTTCC TCATGTGCCA 
TCTTCTGACT GTGTAATCGG TGGATTCAAC GTTCCACGTG ATACGATCGT 
GTTGGTTAAC TTGTGGGCTA TACATCGAGA TCCAAGCGTG TGGGATGATC 
CAACGTCATT TAAGCCGGAG AGATTTGAAG GGAGTGATCA GTTTGGACAT 
TACAATGGTA AAATGATGCC GTTTGGGTTA GGAAGACGGG CTTGTCCTGG 
GTTGAGTTTG GCTAACCGGG TTGTTGGGTT ATTATTGGGT TCGATGATTC 
AGTGCTTTGA GTGGGAAAGC GGCTCAGGAG GTCAGGTTGA TATGACTGAA 
GGTCCAGGAC TTAGTTTGCC TAAGGCTGAA CCATTGGTTG TCACGTGCAG 
AACACGTGAG ATGGCTTCCG AGTTGTTGTT CTTCGGATCA GAGCCAAGCA 
ATAAGAATGT CTAGATTTGA TTTTATAAAT TTGTAAGTTA ATACATTATT 
ACATGCATAT ATGATTCAGT GATTTATTAA GCAGCAAAAT GTTTGGAGAC 
AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G37310.1 [+] show detail - cytochrome P450, family 81, subfamily H, polypeptide 1
    E-value: 0; Score: 99.77

 

InterPro Scan Digest

Program Description E-value
PatternScan Cytochrome P450, conserved site 0
superfamily Cytochrome P450 2.9e-114
HMMPfam Cytochrome P450 3.1e-90
Gene3D Cytochrome P450 4.5e-107
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, E-class, group I 1.1e-40
FPrintScan Cytochrome P450, C-terminal 9.4e-10
FPrintScan Cytochrome P450, C-terminal 9.4e-10
FPrintScan Cytochrome P450, C-terminal 9.4e-10
HMMPanther CYTOCHROME P450-RELATED 0
HMMPanther Cytochrome P450 0

See the detailed result >

AT4G37310.1

Model type
Protein coding
Short Description
cytochrome P450, family 81, subfamily H, polypeptide 1
Curator Summary
member of CYP81H
Computational Description
"cytochrome P450, family 81, subfamily H, polypeptide 1" (CYP81H1); FUNCTIONS IN: electron carrier activity, monooxygenase activity, iron ion binding, oxygen binding, heme binding; INVOLVED IN: oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Cytochrome P450 (InterPro:IPR001128), Cytochrome P450, E-class, group I (InterPro:IPR002401), Cytochrome P450, conserved site (InterPro:IPR017972); BEST Arabidopsis thaliana protein match is: cytochrome P450, family 81, subfamily D, polypeptide 5 (TAIR:AT4G37320.1); Has 33392 Blast hits to 33202 proteins in 1712 species: Archae - 63; Bacteria - 4035; Metazoa - 11608; Fungi - 7041; Plants - 9430; Viruses - 3; Other Eukaryotes - 1212 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL11-11-H16 introduced

  • F23406 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found