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RAFL14-01-C19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18017)

full reading [+] show sequence

Nucleotide sequence: RAFL14-01-C19 - full reading 
TGCGGAAGGT GTTACCGGAT TTAGGAGAGA TAAAGAAGGT TTCTTCATTT 
AGAAACAGAG ACACGAAGTT TGCGATGATG ATGATGATTC AGAGAAGAGG 
AGGTGAGAGA CAAGACTCGT CGGCACCGGC GTACAACGTT GTCCATAAGT 
TGCCTCACGG AGACAGTCCT TATGTCCGAG CGAAGCATGT TCAGTTGGTG 
GAGAAAGATG CAGAAGCAGC GATAGAGTTG TTTTGGATAG CGATTAAAGC 
GAGAGATAGA GTTGATAGTG CTCTTAAAGA CATGGCCTTG TTAATGAAAC 
AACAGAACAG AGCTGAAGAA GCCATTGACG CTATTCAATC CTTTAGAGAT 
CTTTGTTCAA GACAAGCTCA AGAGTCATTA GACAATGTCC TCATCGATCT 
ATATAAGAAA TGTGGGAGAA TAGAAGAGCA AGTTGAGTTA TTGAAGCAAA 
AGCTTTGGAT GATATATCAA GGAGAAGCAT TCAATGGCAA ACCAACAAAG 
ACTGCGAGAT CTCATGGCAA GAAGTTTCAG GTCACCGTCG AGAAGGAAAC 
CTCTAGGATC TTGGGGAACT TGGGATGGGC TTATATGCAA CTAATGGACT 
ATACAGCAGC TGAAGCTGTG TATCGGAAAG CTCAATTGAT AGAGCCAGAT 
GCAAACAAGG CTTGCAATTT ATGCACATGT CTCATCAAGC AAGGGAAGCA 
CGATGAGGCG AGGTCGATTC TCTTTCGTGA TGTACTAATG GAGAACAAAG 
AAGGGTCTGG TGATCCGAGG TTGATGGCTC GGGTTCAAGA GCTATTGAGT 
GAGCTAAAGC CACAGGAAGA AGAAGCAGCG GCTTCTGTGT CTGTGGAATG 
TGAAGTTGGT ATAGATGAGA TAGCGGTTGT CGAAGGACTT GATGAGTTTG 
TGAAGGAATG GAGGAGGCCT TATAGGACAA GAAGACTTCC GATTTTCGAA 
GAGATCTTAC CACTGAGAGA TCAATTGGCT TGTTGATGAT TCTCTGTGTG 
TTTGGATTGA TGTTTGAATA CTGAATAGGA ACCTTTTTGG GTAGAAGAAT 
GTAGTGAGTG AATAGAGTTT ACCTCTTGTA AGCTTTTTCG GGTGTCGTTG 
TCTGTTATTA CCGCAATGTC AAATGATCTC ATTCCAAAAG TAATTCCAAA 
AGTAGTTGAT GCTAAAAAAA AAA

Gene models with high sequence identity

  1. AT1G04770.1 [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
    E-value: 0; Score: 99.83

 

InterPro Scan Digest

Program Description E-value
HMMPfam Tetratricopeptide TPR-1 1.4e-05
ProfileScan Tetratricopeptide repeat 9.175
ProfileScan Tetratricopeptide repeat-containing 9.16
HMMSmart Tetratricopeptide repeat 0.0031
superfamily TPR-like 1.8e-16
Gene3D Tetratricopeptide-like helical 5.3e-08

See the detailed result >

AT1G04770.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT5G48850.1); Has 226 Blast hits to 224 proteins in 29 species: Archae - 0; Bacteria - 22; Metazoa - 1; Fungi - 0; Plants - 173; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-01-C19 introduced

  • F08146 - Specific phenotypes were NOT observed.
  • F10834 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found