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  3. RAFL14-02-N04

RAFL14-02-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18054)

full reading [+] show sequence

Nucleotide sequence: RAFL14-02-N04 - full reading 
AGTTCGGCAA CCAAACCAAA CATTCAGAGA GACACAACAC AACCACATCA 
TCACACGTTT CTCTCTCTCT CTTTCCTCTC CGTCGTCTCT CTCTCTCTAG 
CCACCACCAA AATCCTTAAA ACCTAGACTT TTCTCTTCCA TCGATGGCGG 
CTAATAACAG ATCCGATCAT GGGTCAGACG AAAACACAAG ACTTTACAAT 
CCTTACCAAA ACTACGAAGT CCCAATCAAC AAATCTCAGT ACCTTTACAA 
GCTTCCTACC TCCCCTGAGT TTCTCTTCAC GGAGGAGGCT TTAAGGCAAC 
GTAGATCTTG GGGTGAGAAT CTCACTTTCT ACACCGGAAC AGCTTACCTC 
GGTGGCTCCG TTGCCGGAGC TTCTGTTGGA GTCATCACTG GAGTCAAAAG 
CTTCGAATCT GGCGACACTA CTAAGCTCAA AATCAACAGG ATCTTGAACT 
CTTCTGGTCA AACTGGTCGA ACTTGGGGTA ATCGGATTGG TATCATTGGA 
TTGGTTTACG CAGGGATCGA GAGTGGTATT GTGGCTGCCA CGGATAGAGA 
TGATGTTTGG ACCAGTGTGG TGGCTGGTCT TGGAACCGGA GCTGTTTGTA 
GAGCGGCGAG AGGAGTGAGA TCTGCAGCTG AACCGAATAA ATTCCCAGAG 
ATTCCTCTCA TTTAATCACT TCAGATTCGA AAAAAGTTCT CTCTTTTTCC 
CAAAAAAAAC TTTCTCATAC AATGGACTCT ACTACCACAC CTCCTTCTCT 
CCGTTCGAAT ACTAGATCCG CTTTGCGTCT AGCTCGAAAC AACAAAACTC 
TCGTAAAATC TCACATTCCA TCTCTCGATT TGGTTTTATT GTCTCCGAAG 
AACAACAACG GTACTCCTTA CCCATCACCT GTTTCTCTCA GTTCACCATC 
TTCTCGTGTT ACTCTTCGTG AGATTCTCCT TTTATCTCCT TCCCCTCTTC 
GTAAATCGAG AACCCGTTTA AGCAATCGGT TCGATATGGA AGCTGCGGAG 
GCTGCTGTGA CGGCACGACG GAGTAAGACG AAGGGAGGGC AAAATGGTCT 
TTTGGCCTCG CCGTCGCCGA GGAATTTCCG GAGGTCGAGA CTAAGGTCGG 
AGGCGATGGT AGATACAAAG GAAAATACGG AGCCAATTGT TGTCGTGACC 
GATGAAAAGA AACAAAACCA GAGGAAACAG AAGAAGTTGG GTCGATCTAA 
GAAGGAGAAG CACAGTTCTG TTCCTCTGTT AGCTTCTCCT AGTCCATCTT 
CAGATCAACC TCAAGATGTT TGTCAAGGTG ATTTAGAGCG GATTAGAGAG 
AATATAAGCG ATTTGATTAT GTGGAGAGAT GTTGCGAAAT CAACACTTTG 
GTTTGGTTTT GGCTGTATAT GTTTCCTATC TACTTGCTTT GCTGCTAAAG 
GATTTAACTT TAGTGTTTTC TCAGCGATCT CCTATCTTGG ACTTTTGTTT 
CTTGGGGTAT CGTTCTTGTC AAATACTCTT CGCCAAAGGG TTACTGAAGA 
AGCGCGGAGA GAGCTTAAAT TGAGTGAAGA TGATGTATTA CGAATAGCTA 
GACGAATGCT TCCCATCACC AATTTAGCAA TTTCAAAGAC GAGTGAGCTT 
TTCTCTGGTG AACCAGCAAT GACACTCAAA GTGGCACCTT TTGTTCTAAT 
GGGAGCTGAG TATGGTTACC TCATAACATT GTGGAGATTA TGTGCTTTTG 
GTTTCTTCCT TAGCTTCACT ATTCCAAAGC TATATTCATG TTACGCAAGT 
CAGCTTAACC AAAAAGTTGA GTGTGCACAA AGGAGATTTG TTGAAGCTTG 
GGGAGTTTGC ACACACAAGA AATTCGTAGC AGGCTCTGCA GTTACTGCAT 
TCTGGAATCT AACTTCTCTC AAGACCCGTT TTATTGCAGT GTTTATCATA 
GTAGTAGTAA TCAGATACAG ACGACAGAAT CTACAGTTAG ATTCCGAGGA 
TGAGGAGGAG AAGAAGCAAC AAGAAAAAAC TCACCCGGAG CAACAAAAAT 
CGCCGGAGGA TAAGTCAACT TCACCGCGGT CAGCAGAAGA AGAGCAAGCG 
TTGGTGCTAG TTGCAGAAAC CAAAGCACCA AAGAAGCTTT ATTAGTCTAG 
TCACTAGTGT CTTTTCAGTA TCCACCTGTG TAATAATATT TCACATTTAC 
GTAATAATAA ATAAAGAGCA GTCATTAATA CCAAAA

Gene models with high sequence identity

  1. AT4G28430.1 [+] show detail - Reticulon family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
HMMTigr Mitochondrial inner membrane translocase complex, subunit Tim23 1.3e-76
HMMPfam Reticulon 8.6e-29
HMMPfam Mitochondrial inner membrane translocase complex, subunit Tim17/22 1.3e-21
HMMPanther RETICULON3 3.6e-05
HMMPanther Reticulon 3.6e-05
HMMPanther TIM23 1.7e-64
Coil coiled-coil 0
ProfileScan Reticulon 11.364

See the detailed result >

AT4G28430.1

Model type
Protein coding
Short Description
Reticulon family protein
Computational Description
Reticulon family protein; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, chloroplast; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Reticulon (InterPro:IPR003388); BEST Arabidopsis thaliana protein match is: Reticulon family protein (TAIR:AT2G20590.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-02-N04 introduced

  • F18226 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found