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  3. RAFL14-04-L12

RAFL14-04-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18085)

full reading [+] show sequence

Nucleotide sequence: RAFL14-04-L12 - full reading
CTTCTAGTCT TCTTCTTCGA ACTCTTTTTT TAAGACCAAA AAAAAACACA 
CACAAAGAGA TGTCTTTTGT CTGACTCCAT AATCACACCA TCACCAAGAA
GAAGAAGATC TAGGTTTTGC ATCTCTCGTC ATTACAATGG AGCGAGCACG
AACCGAAAGC CCTAGCTACT TCCGTCAATG GAGCGGCGAT TCAGGTACCA
CCAATGCCGC CGCCGTAGCT CCTTCTTCTC CGGCGCGTCA TCACCACGCT
CGATCTTCTT CCGTCACTAA TATGTCTAAC GTCAAACGAG CTCAAAACGT
TGCTGCTAAA GCCGCTGCTC AGAGACTTGC TAAAGTCATG GCTTCTCAGA
CCAACAATGA TGACGACGAT GACGATGATG ATGATGAAGT CGGTGGTGAT
GATTTAGGTT TCCGATATGG TGCTCCTCCT CCTCTTTCCT TCACTAGAAA
TCCTTCTTCC ACAATTGCTA AACCTAAACC TGTTGCTTCT TCTGCTGTTG
TTCCTCCTCC TAAGATCTCT AGATCTTCCT CCCCTGCGAA CTCTCCAGCT
GTGTCTGTTC GGGCATCGCA ACCGCCTGTT CCACCGAGTA AACTGAGGAA
TCAAACTACC AATCCTTTAC CAGTTGCAAC TCCTAAGACT GAAAAGAGGG
TTTTAGCTGA TATTGGTCAT TTTAATGGAA AAGATTCGAA AGATCAGCAT
GAAGCATCTG CACTTCGTGA CGAACTTGAT ATGCTGCAAG AGGAGAATGA
TAGTATACTT GAAAAGCTTA GGCTTGAGGA TGAGAAATGC AAGGAAGCAG
AAGCTAGGGT GAGAGAGCTT GAAAAACAGG TAACTTCTCT GGGAGAAGGT
GTATCATTGG AAGCTAAACT TCTGAGCCGA AAAGAAGCAG CTTTGCGTCA
AAGAGAGGCG GCCCTCAAAG ATGCAAGGCA GAATAGAGAT GGGACTAATA
GAGAGACTAC TGCTCTTCGG TCTCAAGTAG AGACTGCAAA ACTGGAGACC
GCTGCTATAG TAGCACAACT TCAAGGAGCA GAATCTGAAG TCAATGGTCT
ACGGACAATG ACGCATAGAA TGATATTGAC CCAAAAGGAG ATGGAGGAAG
TTGTTCTTAA GCGGTGCTGG CTAGCTCGGT ATTGGGGTCT AGCTTCCAGA
TATGGAATAT GTTCGGATAT AGCTACGTCC AAGTACGAAT ACTGGTCATC
TCTGGCTCCT CTTCCTTTTG AAATTGTGCT GTCAGCTGGA CAGAAGGCTA
AAGAAGAAAG TTGGGAAAAA GAATCTGAGG AGAACGAGAA GAGGAGCCAG
CTCGTTCAAG ATATAAATGA TCTAACAGGA GAAGGAAATA TTGAAAGTAT
GCTCTCTGTG GAAATGGGTC TAAAGGAGCT AACTTCTTTA AAGGTTGAAG
TTGCCATTAC TATTACATTA GCCCAGCTAA GGTTGGCCAA TACTACTCGA
CTGTCTGATA TCGAGTTAAA ATCACCAGGT GGTCCTAAGA TTACGGAGAC
ACTTGAATTG AGTCAAGAAG AGTCTGAGGA TGTTCTCTTC AAGGAGGCTT
GGCTCACGTA CTTCTGGAGA AGAGCACAAT CCCTTGGCAT AGAAGTGGAC
ACTGCGAGAG AACGTCTTAG ATTTTGGATC AGCAGGAGCG CACATTCTCC
ATCTTCACAT GACGCCATGG AAGTTGAGCA AGGACTAACA GAGCTAAGAA
AGCTGCGGAT AGAACGTAGA TTGTGGGAAG CCTCCAGGTC CAGCCAGTAA
GTAGTGACCT TGGGGACCTC GGGATCCCAG AACAGTCTTG CTACCACAGC
TTTAACAGTA CTGTATATCG TACATGCTTT CTTCTCGTGT GGTTGGGGTA
CTTTGCAGTC AGAAAAATGT TTCCAGTTTT GTAAACCGAA GAATTGTATT
ACACGCACTA CTTTTGACAT ATAATATATC CACGTTTTCA CGTCCTAACC
AAAAAA

Gene models with high sequence identity

  1. AT5G13260.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); ...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Coil coiled-coil 0
Coil coiled-coil 0

See the detailed result >

AT5G13260.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G48860.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-04-L12 introduced

  • F00932 - seed::decreased length / seed::increased width
  • F12745 - Specific phenotypes were NOT observed.
  • F29114 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found