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RAFL14-04-N08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18088)

full reading [+] show sequence

Nucleotide sequence: RAFL14-04-N08 - full reading 
AAAGAGAGAG ATTGAGGATG TCTCACAGTC ACGGGAACGC TTCGTCGGTG 
AACGATCCAC GGCAGCCTTC GGCGGCAAAG CCTTACATTC CACGGCCTGT 
AGCGCCGGAG GATCTTCCCG TTGACTACTC CGGATTCATC GCCGTTATCC 
TCGGCGTCTC CGGCGTTATG TTCAGGTACA AGATATGCTC GTGGCTTGCA 
ATTATATTCT GTGCACAATC TCTGGCCAAC ATGAGGAACT TGGAAAATGA 
TTTAAAGCAG ATCTCCATGG CTATGATGTT TGCTATAATG GGATTGGTTA 
CAAACTACTT AGGGCCTAAC AGACCCGCGA CAAAGAAATA ATCCTCATGT 
CTTAAGAGTA GTATGCTTTT TTTTGATAAA CCTTGTATGG CTCTTGTTTC 
CGCACCAGAG ATTGCTAGTG GTTTGTCTTT GTGTTTTCGA CTCTCTAATC 
CTTGAGTAGC AAACTAGAAC CTTGAGCTCT TGCTCATTTG TGGAGTTCAA 
AGACTTTTCA GTCCAGATGC AAAAAATGTG AAATCCGACT TTTTCCCAAA 
AAAAAAA

Gene models with high sequence identity

  1. AT5G07960.1 [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR...
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Uncharacterised protein family UPF0139 8.4e-46
HMMPanther Uncharacterised protein family UPF0139 3.5e-42
Coil coiled-coil 0
BlastProDom Uncharacterised protein family UPF0139 5e-40

See the detailed result >

AT5G07960.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-04-N08 introduced

  • F02416 - Specific phenotypes were NOT observed.
  • F15743 - Specific phenotypes were NOT observed.
  • F20714 - seed::increased size / seed::increased length / seed::decreased width

Mutant lines with disrupted or induced

3 mutant lines found