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  3. RAFL14-05-K08

RAFL14-05-K08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18099)

full reading [+] show sequence

Nucleotide sequence: RAFL14-05-K08 - full reading 
GTATATGCCG CTTAACTCCT ATATTTTCTT TCTCTTTCTC ACAACTTCCC 
CTAGAAACAC TTTTTTCGGA ATTCGAACGC ACAGCGATCG GATAATGGCG 
ACGGAGCATA TAACTCGTAC GGGAGATGAA TACAATGTCG AGCTTTTACC 
TAGTGACGAC GATGCGCCGC CGCTTGAATC GTCTTGGCGT CTCAACCTCG 
ACGCTTTTCA ACTCCCTTCT TCCACCGGTG GCCGTCACGA CGGACGTACT 
CGCTTTTCTC GCTATTTTCG TACTCCAAGA AAGGAACGTA GAGTCTCTGA 
ATACTACAAG AAGCAAGAGA GGCTCCTCGA GGGTTTCAAT GAGATGGAGA 
CTATCCACGA AAATGGTTTT GCATCTGGTG TTCCAACTGA GGAAGAAATG 
AAGAAGCTTG CAAAGAGTGA GAGACTTGCG GTTCACATAT CGAACGCAAC 
AAATTTGGTG CTTTTTGTAG CAAAAGTTTA TGCCTCTATG GAGAGTAGAT 
CCATGGCTGT GATTGCTTCA ACTTTGGACT CTCTTTTGGA TCTCTTGTCT 
GGTTTTATCC TCTGGTTTAC AGCTAATGCC ATGAGAAAAC CAAACCAGTT 
TCACTATCCT ATCGGAAAGC GCCGGATGCA ACCTGTGGGT ATCATTGTGT 
TTGCTTCCGT GATGGCAACT CTTGGACTGC AAGTTTTGCT AGAGTCAGGA 
AGGCAACTAG TTGCCAAGAG TGGTATTCAT ATGAATAGCA CAGAGGAGAA 
ATGGATGATT GGTATCATGG TCTCTGTCAC CATCGTGAAG TTTCTTCTAA 
TGCTTTATTG CAGAGGATTT CAGAACGAAA TCGTTAGGGC CTATGCTCAA 
GATCACCTCT TTGACGTCGT CACTAATTCA ATCGGCTTAG CAACAGCTGT 
CTTGGCCGTC AAATTCTACT GGTGGATTGA TCCTACCGGT GCTATACTTA 
TTGCTTTGTA CACCATAGCA ACATGGGCAA GAACCGTACT AGAGAACGTC 
CATTCACTGA TCGGCCGCTC TGCGCCACCA GATTTCTTGG CGAAACTGAC 
ATTCTTGATA TGGAACCATC ACGAACAAAT TAAGCATATT GACACAGTAA 
GGGCTTACAC TTTTGGGTCA CACTACTTTG TGGAAGTGGA CATTGTTTTG 
CCAGAGGACA TGAGACTACA AGAGGCTCAC AACATCGGAG AGACTCTTCA 
GGAAAAGCTC GAGCAGCTCG CTGAAGTAGA ACGAGCTTTT GTCCACATAG 
ACTTTGAGTT CACTCATCGT CCTGAACACA AGTGTAACTA GATTTTAAGT 
AGTAATTTGT AGTACTATAA TTAGTTCTTT AGTTTATGTA CTCTTCGTGT 
CGTTTTTGTC TATATAGATA CTTGAACGTT GTGCCGTCTC TGTTTATCGA 
AAAAAAAAA

Gene models with high sequence identity

  1. AT1G16310.1 [+] show detail - Cation efflux family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther Cation efflux protein 9.5e-65
HMMTigr Cation efflux protein 1.6e-29
Coil coiled-coil 0
HMMPfam Cation efflux protein 8.3e-45

See the detailed result >

AT1G16310.1

Model type
Protein coding
Short Description
Cation efflux family protein
Computational Description
Cation efflux family protein; FUNCTIONS IN: cation transmembrane transporter activity; INVOLVED IN: cation transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Cation efflux protein (InterPro:IPR002524); BEST Arabidopsis thaliana protein match is: Cation efflux family protein (TAIR:AT1G79520.1); Has 5067 Blast hits to 5063 proteins in 1838 species: Archae - 163; Bacteria - 4116; Metazoa - 44; Fungi - 281; Plants - 207; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-05-K08 introduced

  • F09643 - seed::increased size / seed::increased length / seed::decreased width
  • F09747 - Specific phenotypes were NOT observed.
  • F13034 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::increased width / cauline leaf::epinastic / stem::abnormal
  • F20715 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found