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RAFL14-06-B12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18109)

full reading [+] show sequence

Nucleotide sequence: RAFL14-06-B12 - full reading 
ATTCAGTCGG ACCAACTTGT GACCGAAGAA AGCAAATTGA GACTACGCAC 
CAACTAGTCC TTTGGTTTGT ATCTTAAGAT AAAGGTTTCT TTTATGGACG 
GTTCTTCGTT TCTCGACATC TCTCTCGATC TCAACACCAA TCCTTTCTCC 
GCAAAACTTC CGAAGAAGGA GGTCTCAGTT TTGGCTTCTA CTCACTTAAA 
GAGGAAATGG TTGGAGCAAG ACGAGAGCGC AAGTGAGTTA CGAGAGGAGC 
TAAACAGAGT TAATTCAGAG AACAAGAAGC TAACAGAGAT GTTAGCTAGA 
GTCTGTGAGA GCTACAACGA ACTACATAAT CATTTGGAGA AGCTTCAGAG 
TCGCCAGAGC CCTGAAATCG AGCAGACCGA TATACCGATA AAGAAAAGAA 
AACAAGACCC GGATGAGTTC TTAGGCTTTC CTATTGGACT CAGTAGTGGA 
AAAACTGAGA ACAGCTCCAG CAACGAAGAT CATCATCATC ATCATCAGCA 
ACATGAGCAG AAAAATCAGC TTCTTTCATG TAAAAGACCA GTCACTGATA 
GCTTCAACAA AGCAAAAGTT TCGACTGTCT ACGTGCCTAC TGAAACATCG 
GACACAAGCT TGACAGTTAA AGATGGATTT CAATGGAGGA AATACGGACA 
AAAGGTTACA AGAGACAACC CGTCACCTAG AGCTTACTTT AGATGCTCGT 
TTGCACCGTC TTGTCCAGTA AAAAAGAAGG TACAACGCAG CGCAGAGGAT 
CCATCTTTAC TTGTAGCGAC ATACGAAGGG ACGCATAACC ACTTGGGTCC 
AAATGCTTCT GAAGGGGATG CTACAAGCCA GGGTGGGTCA AGCACAGTGA 
CTTTGGATCT GGTTAATGGC TGTCATAGAC TAGCGTTGGA GAAAAACGAA 
AGGGATAATA CGATGCAAGA GGTTCTGATT CAACAAATGG CGTCATCGTT 
AACAAAAGAT TCGAAATTTA CAGCTGCTCT TGCTGCTGCT ATATCTGGGA 
GGTTAATGGA GCAATCTAGA ACATGAACGT TTTTAGTGAA TGTATTGTTT 
TTGTTTGTTT AGAATGATTC TTCGTTTTCG AATTGTGTCT TTCGATTAGG 
AGATAAAAGA TGTATATAAA TATTATAAGT AGATGAAGAA ATCGTATAAG 
TATTCGAGAA ACTTTAAATG TACGAATTCT ATATAACCAG TTAGATGTCG 
TCTGAATACT GTATATGAAA ATTTTGAAAT AAATGATGTG GCTAAAAAAA 
AAA

Gene models with high sequence identity

  1. AT4G31800.1 [+] show detail - WRKY DNA-binding protein 18
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart DNA-binding WRKY 1.4e-33
Gene3D no description 2.3e-22
ProfileScan DNA-binding WRKY 25.499
HMMPfam DNA-binding WRKY 4.1e-27
Coil coiled-coil 0

See the detailed result >

AT4G31800.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 18
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Constitutive expression of WRKY18 enhanced resistance to P. syringae, but its coexpression with WRKY40 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 18 (WRKY18); FUNCTIONS IN: protein binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 7 processes; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 60 (TAIR:AT2G25000.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-06-B12 introduced

  • F10202 - Specific phenotypes were NOT observed.
  • F23210 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found