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  3. RAFL14-09-K17

RAFL14-09-K17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88420)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL14-09-K17 - 5 prime EST 
AACCGGTAAG ATCCAGAGAT TGATTGAATC AGCTTACTAT TTTATATAAT 
TCAGTTTGTT GTTCCTCAGA CTTGTAACTA GGACAGTCTT CTCATGAATC 
ATGACTTCTT CAGTACATGA GCTCTCTGAT AACAATGAAA GTCATGCGAA 
GAAAGAACGT CCAGATTCCC AAACCCGACC ACAGGTTCCT TCAGGACGAA 
GTTCGGAATC TATTGATACA AACTCTGTCT ACTCAGAGCC CATGGCACAT 
GGATTATACC CGTATCCAGA TCCTTACTAC AGAAGCGTCT TTGCACAGCA 
AGCGTATCTT CCACATCCCT ATCCTGGGGT CCAATTGCAG TTAATGGGAA 
TGCAGCAGCC AGGAGTTCCA TTGCAATGTG ATGCAGTCGA GGAACCTGTT 
TTTGTTAACG CAAAGCAATA CCATGGTATA CTCAGGCGCA GGCAATCCCG 
GGCAAAACTT GAGGCACGAA ATAGAGCCAT CAAAGCAAAA AAGCCATACA 
TGCATGAATC TCGGCATTTA CATGCGATAA GACGGCCAAN ANGATGTGGT 
GGCCGGTTTC TAATGCCAGA AGGAAAATGG AGACCNCAGG GGGGNGGNGG

Gene models with high sequence identity

  1. AT2G34720.1 [+] show detail - nuclear factor Y, subunit A4
    E-value: 0; Score: 99.31

3 prime EST [+] show sequence

Nucleotide sequence: RAFL14-09-K17 - 3 prime EST 
GCCTTTATTA TTTAGTTTGT TCAACTTCAA GCTCTTCTTA ACGCTAAATT 
TTCTGGGGGA TTTCTTGGAG TCTTCTGATG CAGCTTGAGC AGAAGCCATC 
TCCACATCTT CCATAGTAAC AAGACCCTTC TCCACCATAT CTTTCTGCTC 
TCTGGGCCAT TTGCGAAGGA GCTTTCTCTG ACGTTTGCCG GAGACGGAGG 
GGACCGGAGT TCTGGTCTTC AATTTATTGG TGAGAGGATC GCCGTGAATG 
GCTCGTTTTC TATCGGCTTT AGCCTCTCTC TTCTTCTTCG CAACTCTCGT 
TGTACTTGGC ATCTTACTAC TCTCAGTTTT TTTTTTTTTT TTAGCTAAGA 
ACATTAATTT ACTTTCCAAA AAATGAGTTA TTGGCAAAGA ATATCAATTT 
GGTACAACAA TACTTCCAAC TCACACTTTT CAT

Gene models with high sequence identity

  1. AT1G08580.1 [+] show detail - unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazo...
    E-value: 7e-172; Score: 99.07

AT1G08580.1

Model type
Protein coding
Computational Description
unknown protein; Has 39 Blast hits to 39 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 35; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G34720.1

Model type
Protein coding
Short Description
nuclear factor Y, subunit A4
Computational Description
"nuclear factor Y, subunit A4" (NF-YA4); CONTAINS InterPro DOMAIN/s: CCAAT-binding transcription factor, subunit B (InterPro:IPR001289), CCAAT-binding factor, conserved site (InterPro:IPR018362); BEST Arabidopsis thaliana protein match is: nuclear factor Y, subunit A7 (TAIR:AT1G30500.2); Has 682 Blast hits to 682 proteins in 159 species: Archae - 0; Bacteria - 0; Metazoa - 143; Fungi - 131; Plants - 381; Viruses - 0; Other Eukaryotes - 27 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-09-K17 introduced

  • F13744 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found

4 mutant lines found