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RAFL14-20-M13

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18321)

full reading [+] show sequence

Nucleotide sequence: RAFL14-20-M13 - full reading
GCTTTCACCG GAAATCTCCG ATGAAAGACT TTGTTTCTCT CAAGATCGTT 
ATATCTTCCA TATTCTTAGA TCTGATGGTC TTACCTTTCT CTGTATGGCC
AATGATACCT TTGGAAGGAG GGTTCCATTT TCGTATTTGG AAGAGATTCA
TATGAGATTC ATGAAAAACT ATGGCAAAGT GGCTCATAAT GCTCCAGCTT
ATGCAATGAA TGATGAATTC TCAAGGGTTT TGCATCAGCA GATGGAGTTC
TTCTCTAGTA ATCCTAGTGT TGATACTCTC AATCGTGTTA GAGGAGAAGT
CAGTGAGATT CGATCGGTCA TGGTAGAGAA CATTGAGAAG ATAATGGAAA
GAGGTGATAG GATTGAGCTT CTTGTTGATA AAACAGCAAC AATGCAAGAT
AGCTCGTTTC ACTTCAGGAA GCAATCTAAG CGCCTTCGCC GAGCTCTTTG
GATGAAAAAT GCTAAGCTCC TGGTCTTGTT GACATGCTTG ATAGTTTTCT
TGCTGTACAT AATAATCGCA TCTTTCTGCG GAGGAATCAC TTTACCATCA
TGCAGATCTT AAAATCTGGC GGCCTTATCT AAGGTATACT GAAACGGACC
ACTGTTTTTG TAAATCAACT CAGTCGCATC ATTTCGATTT GAAGCCTTGG
TTTTGTCATG AAAATGACTG TGAGTTTGAA GTTACATGTC ATGGTCCTCC
TTGCTTATGT AACTCTTGTA AATGTCAAAA TCAAAATGAT ACAGAGGTTC
ATTGAACTCT TGCCTTGTCT TTTAGATTTA GTCACGTGAG TGAGTTTGTT
CTCTGTATTT CCAAAACTTT ATCCGCTGTG TCTTTATAAT TTTTGCATTT
GCAATGTACA TCACATATTC GTTATTTTTG TTGTTAAAAT TACTTCAGTT
TTCATCTTTG TTTAATAACA TTTCTGATTC ACAAAAAAAA

Gene models with high sequence identity

  1. AT5G22360.1 [+] show detail - vesicle-associated membrane protein 714
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Synaptobrevin 0.0000000000000789999609889417
FPrintScan Synaptobrevin 0.0000000000000789999609889417
FPrintScan Synaptobrevin 0.0000000000000789999609889417
superfamily Longin-like 3e-21
ProfileScan Synaptobrevin 0
ProfileScan Longin 0
Gene3D G3DSA:1.20.5.110 1.79999754022378e-21
HMMPanther PTHR21136 1.09999184471398e-86
PatternScan Synaptobrevin 0
HMMPfam Synaptobrevin 1.99999999999999e-28
HMMPanther PTHR21136:SF8 1.09999184471398e-86

See the detailed result >

AT5G22360.1

Model type
Protein coding
Short Description
vesicle-associated membrane protein 714
Curator Summary
Member of Synaptobrevin-like AtVAMP7C, v-SNARE protein family.
Computational Description
vesicle-associated membrane protein 714 (VAMP714); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to salt stress; LOCATED IN: Golgi apparatus, vacuole, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Longin (InterPro:IPR010908), Longin-like (InterPro:IPR011012), Synaptobrevin (InterPro:IPR001388); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein 713 (TAIR:AT5G11150.1); Has 2317 Blast hits to 2315 proteins in 268 species: Archae - 0; Bacteria - 0; Metazoa - 867; Fungi - 487; Plants - 553; Viruses - 0; Other Eukaryotes - 410 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-20-M13 introduced

  • F15625 - Specific phenotypes were NOT observed.
  • F19051 - rosette leaf::decreased size / rosette leaf::increased width / rosette leaf::present in fewer numbers in organism / stem::abnormal
  • F24603 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found