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RAFL14-20-P19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88435)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL14-20-P19 - 5 prime EST 
AACCGGATCT TCTCAAACTA AATCAATTAA AGAGGTTTCT TCTTATAGAA 
ATGAATTTCT CTTATTCTTC CTTGTCAACT TGGACAACCC TAATGACATT 
GGGTTGTCTT CTGCTTCATT CATCCATTTC CAGTGCTCAG CTAACCCCAA 
CTTTCTATGA CAATACATGT CCAAGCGTCT TTACCATCGT ACGGGATACC 
ATAGTAAACG AGCTAAGATC GGATCCTCGT ATCGCTGCAA GCATCCTTCG 
TCTTCACTTC CACGACTGTT TCGTCAATGG CTGTGATGCA TCGATCCTGT 
TAGACAACAC AACATCCTTT CGAACAGAGA AAGATGCGGC TCCAAACGCA 
AACTCGGCTC GAGGATTTCC AGTGATCGAT AGAATGAAAG CAGCAGTAGA 
GACAGCATGT CCAAGGACTG TTTCATGCGC AGATATACTT ACCATCGCAG 
CTCAACAAGC TGTAAATTTG GCAGGAGGTC CTTCTTGGAG GGTTCCTTTG 
GGGAGAAGAG ATAGCTTACA AGCATTCTTT GCTCTCGCTA ATACAAATCT 
TCCCGCTCCA TTCTTCACTC TCCCACAACT TAAGGCCAGT TTTCAAAATG 
TTGGACTTGA CCGTCCCTCT GATCTCGTTG CACTCTCTGG TGGTCACACA 
TTTGGTAAAA

Gene models with high sequence identity

  1. AT3G32980.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

3 prime EST [+] show sequence

Nucleotide sequence: RAFL14-20-P19 - 3 prime EST 
CCAACATTAC ATTATTAAGA TTCAAAAACA TAATACAACT TGAAAACACA 
TGAGAGAGAT GATCACACAG CATTGATGAT TTATAAAAAA CAAGACCATA 
GATCCAAGTA AAAGGACTTG TTAGAAGATT AGATGCATTG ATCAGTCCAT 
GAAAAGTATC AGTTGTGTCT GCAAGCAATG TAGCTGGCAA GAGCCACCAA 
AGGGGCCGCC TTACTTGGAT CAAACCCTAG AAGCTGTTCC TCTGGTTCTC 
TCCTCAGTTT CTCTGAAACT TCCCTGGATC CCTCCAAACC TATAAGCCTT 
GGATACGTCA GCTTTCCGGC CATTACGTCT TTTCCGGCTG TGTTACCCAA 
TTCCTAAGTA GATTTGGTTA GGTCGAGAAT GTCATCAACA ACCTGAAACA 
GTAGTCAATA CACCTAGGAT ACTTTCTAAG T

Gene models with high sequence identity

  1. AT3G14530.1 [+] show detail - Terpenoid synthases superfamily protein
    E-value: 0; Score: 97.68

AT3G14530.1

Model type
Protein coding
Short Description
Terpenoid synthases superfamily protein
Computational Description
Terpenoid synthases superfamily protein; FUNCTIONS IN: farnesyltranstransferase activity; INVOLVED IN: isoprenoid biosynthetic process; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Polyprenyl synthetase-related (InterPro:IPR017446), Terpenoid synthase (InterPro:IPR008949), Polyprenyl synthetase (InterPro:IPR000092); BEST Arabidopsis thaliana protein match is: geranylgeranyl pyrophosphate synthase 3 (TAIR:AT3G14550.1); Has 16918 Blast hits to 16911 proteins in 2965 species: Archae - 341; Bacteria - 9533; Metazoa - 310; Fungi - 484; Plants - 460; Viruses - 12; Other Eukaryotes - 5778 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G32980.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cell wall, vacuole, membrane; EXPRESSED IN: leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Peroxidase, active site (InterPro:IPR019794), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: peroxidase CB (TAIR:AT3G49120.1); Has 4309 Blast hits to 4278 proteins in 228 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 49; Plants - 4212; Viruses - 0; Other Eukaryotes - 45 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-20-P19 introduced

  • F26322 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found

4 mutant lines found