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RAFL14-21-M11

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18335)

full reading [+] show sequence

Nucleotide sequence: RAFL14-21-M11 - full reading 
GTGTTTATCG TATGTTTCAC ACAGTACACG CTTCAGTGGG AGTTGTTGGG 
TGATCGGTCC GAGGCGACAT ACAAGATGAC CGGAAACTCT TTTAACTCGA 
TGAAAGATTT CCTGAAGCAG ACAGGCGGCT ATGCGGTAAT AGACGGAGGG 
CTTGCAACGG AGTTCGAGAG ACATGGAGCA GATCTCAACG ATCCTCTCTG 
GAGCGCCAAA TGCCTTGTCA CCTCTCCTCA CCTCATTCAC ACCGTGCATC 
TCGATTACCT TGAAGCTGGT GCTGATATCA TCTCCAGCGC TTCTTATCAG 
GCCACGATTC AGGGGTTTGA AGCAAAGGGA TTTTCTAGAG AAGAGAGCGA 
ATCTTTGCTT AAAAAGAGCG TAGAAATAGC GACTGAAGCT CGGAACTCGT 
ATTATGACAA ATGCGGAACT AGCTCTTCCA TGGATGATAA GATTCTCAAA 
AAGCGCCCTA TATTAGTTGC AGCATCAGTT GGTAGCTACG GTGCATACTT 
GGCTGATGGG TCTGAATACA GTGGAATCTA TGGTGATTCG ATCACGCTGG 
AAAAGCTGAA GGATTTTCAC CGCAGACGAC TCCAAGTTCT GGCGGAATCT 
GGTGCTGATT TAATAGCATT TGAGACCATT CCAAACAAGA TAGAGGCTCA 
GGCATTTGCT GATCTATTAG AAGAGGGAGA TGTGAAGATT CCTGGGTGGT 
TTTCATTCAA CTCAAAGGAT GGCGTAAACG TGGTTAGCGG GGATTCCATC 
AAGGAGTGTA TCTCCATAGC TGAAAATTGT GAGAAAGTAG TGGCGGTTGG 
AATCAACTGT ACCCCTCCAA GATTCATAGA GGGGCTAGTT TTGGAGATAG 
AAAAGGTGAC AAGCAAGCCC ATACTAGTGT ACCCAAACAG CGGAGAAAGC 
TATGATGCTG ATCGGAAGGA GTGGGTGGAA AACACCGGAG TTGGGGATGA 
AGACTTTGTA TCATACGTAG AGAAATGGAT GGATGCAGGA GTGTCTCTCC 
TGGGAGGTTG CTGCCGCACA ACACCAACCA CCATCAGAGC CATCCACAAG 
AGACTCGTCA ACCGCAGATC TCTTTAGCAT TCAACTTCAC TCTCTTCTAT 
GAATCTCTAG AACCTTGGCA ATAGATTTCT ACCAAAAACA TGAATGTTTG 
TCTTCCCTTT GCCAATTACA AATCTAATTT CAAGGAAAAA AAAAA

Gene models with high sequence identity

  1. AT3G63250.1 [+] show detail - homocysteine methyltransferase 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Homocysteine S-methyltransferase 49.193
HMMPanther HOMOCYSTEINE S-METHYLTRANSFERASE 3.7e-43
HMMPanther METHYLTETRAHYDROFOLATE:HOMOCYSTEINE METHYLTRA 3.7e-43
HMMPfam Homocysteine S-methyltransferase 3.8e-88
superfamily Homocysteine S-methyltransferase 4.8e-86
Gene3D Homocysteine S-methyltransferase 9.2e-79

See the detailed result >

AT3G63250.1

Model type
Protein coding
Short Description
homocysteine methyltransferase 2
Curator Summary
Encodes a homocysteine methyltransferase (HMT). Among the three HMT coding genes in the genome, HMT2 is responsible for a significant proportion of HMT activity in the flower stalks and silique hulls. However, HMT2 does not significantly contribute to the total HMT activity in seeds.
Computational Description
homocysteine methyltransferase 2 (HMT2); CONTAINS InterPro DOMAIN/s: Homocysteine S-methyltransferase (InterPro:IPR003726); BEST Arabidopsis thaliana protein match is: homocysteine S-methyltransferase 3 (TAIR:AT3G22740.1); Has 6768 Blast hits to 6760 proteins in 1892 species: Archae - 4; Bacteria - 4264; Metazoa - 340; Fungi - 135; Plants - 163; Viruses - 0; Other Eukaryotes - 1862 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-21-M11 introduced

  • F04139 - Specific phenotypes were NOT observed.
  • F09538 - Specific phenotypes were NOT observed.
  • F12138 - rosette leaf::decreased size / rosette leaf::present in fewer numbers in organism / cauline leaf::present in fewer numbers in organism / stem::decreased thickness / seed::present in fewer numbers in organism / fruit::abnormal / fruit::decreased length / stem::abnormal
  • F19050 - Specific phenotypes were NOT observed.
  • F20847 - Specific phenotypes were NOT observed.
  • F26135 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

24 mutant lines found