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  3. RAFL14-23-D01

RAFL14-23-D01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18351)

full reading [+] show sequence

Nucleotide sequence: RAFL14-23-D01 - full reading 
GTAGACGCAA TCACCGCCGA TTCTCTCTCT CTCTCTCTCG AGTCTCTCGA 
CGGTCGCATA TCAAAAGTCC ATTTCTTTCT TCTCTTTGGA GGATCAGCAA 
CTATGGATGA AGAGTACGAA GTCATAGTTC TGGGTACTGG TCTCAAGGAG 
TGCATCCTTA GTGGTCTTCT CTCCGTCGAT GGTCTTAAGG TACTTCACAT 
GGACAGGAAT GACTACTACG GTGGAGAGTC AACTTCTCTT AATCTCAATC 
AGCTGTGGAA GAAGTTCAGG GGAGAAGAGA AGGCTCCTGC TCATTTAGGT 
TCTAGCAGAG ACTACAATGT TGACATGATG CCAAAGTTTA TGATGGCTAA 
CGGAAAGCTT GTTCGTGTCC TTATTCATAC GGATGTGACC AAGTACTTGT 
CTTTTAAAGC TGTTGATGGA AGCTATGTTT TTGTCCAAGG CAAGGTCCAA 
AAAGTGCCAG CAACTCCCAT GGAGGCCCTC AAATCTCCTC TTATGGGTAT 
TTTTGAGAAA CGTCGAGCTG GAAAGTTTTT CAGCTATGTT CAAGAATACG 
ACGAGAAGGA CCCAAAAACA CATGATGGAA TGGATTTGAG GAGAGTTACA 
ACTAAGGATT TGATTGCGAA ATTCGGTCTT AAAGAAGATA CTATTGACTT 
TATTGGTCAT GCAGTGGCAC TTCACTGTAA TGACAATCAT CTCCATCAAC 
CTGCCTATGA TACTGTAATG AGAATGAAGC TCTACGCAGA GTCCCTTGCA 
CGTTTTCAAG GAGGTTCACC ATATATCTAT CCTCTCTATG GGTTGGGAGA 
ATTGCCTCAG GCATTTGCAC GACTTAGTGC TGTCTATGGT GGGACGTATA 
TGTTGAACAA ACCTGAGTGC AAGGTAGAGT TTGACGAGGA GGGTAAGGTT 
TCTGGTGTTA CATCTGAGGG AGAGACTGCC AAATGCAAGA AAGTTGTCTG 
CGATCCTTCT TACCTAACCA ACAAGGTCAG GAAGATTGGC AGGGTTGCTC 
GGGCGATTGC CATTATGAGC CACCCTATTC CAAACACCAA TGATTCTCAG 
TCGGTGCAAG TCATTCTACC CCAAAAACAA TTGGGCCGCA AATCAGACAT 
GTATGTCTTC TGTTGTTCAT ATTCACACAA CGTTGCTCCC AAGGGAAAGT 
TCATAGCATT TGTGTCAACA GACGCTGAAA CTGATAACCC TCAAACCGAG 
CTCCAGCCTG GAATCGACCT TCTTGGTCCT GTTGATGAGC TGTTCTTCGA 
CATCTATGAT AGATATGAGC CTGTCAACGA ACCCACTTTG GACAACTGCT 
TCATATCAAC GAGTTATGAT GCTACAACAC ACTTTGACAC AACTGTTGTT 
GATGTGTTGA ACATGTATAA ATTGATCACC GGAAAGGAAC TGGATCTAAG 
TGTGGATCTT AACGCAGCTA GTGCTGCAGA GGAGGAATGA TGGAAAATAT 
TGCAAGCTCT GTCTCTCTCT GTTAGTCACC AAATGATGTA ACCGGTTCTC 
TTTCTCCCTC TTCTTAAAAG TTGTCTCACC AAATGTTCTG TTAAAATACT 
AAATCAAACC GATCTCATCA TGCGTACCTA TTCCCGGTTA TCGCAGTCTG 
TTTTTTTCTT CTCAAAAAAA AAA

Gene models with high sequence identity

  1. AT2G44100.1 [+] show detail - guanosine nucleotide diphosphate dissociation inhibitor 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GDI protein 5.4e-76
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
FPrintScan Rab GTPase activator 1.7e-71
superfamily FAD/NAD(P)-binding domain 9.2e-65
superfamily FAD-linked reductases, C-terminal domain 1.4e-43
superfamily FAD/NAD(P)-binding domain 4.7e-16
HMMPfam GDP dissociation inhibitor 5.7e-212
Gene3D no description 1.7e-66
HMMPanther Rab GTPase activator 2.9e-213

See the detailed result >

AT2G44100.1

Model type
Protein coding
Short Description
guanosine nucleotide diphosphate dissociation inhibitor 1
Curator Summary
GDP dissociation inhibitor involved in vesicular membrane traffic
Computational Description
guanosine nucleotide diphosphate dissociation inhibitor 1 (GDI1); CONTAINS InterPro DOMAIN/s: Rab GTPase activator (InterPro:IPR002005), GDP dissociation inhibitor (InterPro:IPR018203), Rab GDI protein (InterPro:IPR000806); BEST Arabidopsis thaliana protein match is: RAB GDP dissociation inhibitor 2 (TAIR:AT3G59920.1); Has 1316 Blast hits to 1209 proteins in 256 species: Archae - 2; Bacteria - 0; Metazoa - 652; Fungi - 289; Plants - 183; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-23-D01 introduced

  • F06549 - Specific phenotypes were NOT observed.
  • F12623 - Specific phenotypes were NOT observed.
  • F14818 - rosette leaf::increased length / stem::increased thickness / cauline leaf::epinastic / stem::abnormal
  • F15342 - Specific phenotypes were NOT observed.
  • F18336 - Specific phenotypes were NOT observed.
  • F19911 - Specific phenotypes were NOT observed.
  • F30130 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

7 mutant lines found