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  3. RAFL14-27-D04

RAFL14-27-D04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18395)

full reading [+] show sequence

Nucleotide sequence: RAFL14-27-D04 - full reading 
GATAGAACCA AAAAAAAAAC ACCTCCGATC TCGGCGAGAG AAAGAGAAAC 
GATCTGTGAG AGAGAATGGA TCAGATCTTG AACAAGGTAG GCTCGTACTG 
GTTAGGTAAG AAGGCGAACA AGCAGCTCGA TTCCGTCGGT GACGATATCA 
ACTCTTTGTC TTCGAGCATC GAAGGAGGAA CAAAATGGTT GGTGAACAAA 
ATCAAAGGAA AAATGCAGAA GCCATTGCCC GAGTTACTAA AGGAGTTTGG 
TTTGCCTGTG GGGATCTTTC CACGTGATGC AACCAACTAC GAGTTCAATG 
AACAGACGAG GAAGTTAACT GTCTTTATTC CATCAATCTG CGAAGTTGGT 
TACAAAGATA CATCAGTCTT GAGATTCACC ACTACAGTTA CCGGATTTCT 
CGAGAAGGGA AAGCTAGCTG ATGTTGAAGG GATGAAGACA AAAGTAATGA 
TATGGGTTAA AGTCACAAGT ATCTCTGCTG ATTCTTCAAA GGTACATTTC 
ACGGCAGGGA TGAAGAAAAG CAGAAGCCGA GATGCTTATG AGGTTTTAAG 
AGATGGCGTT GAGATTGATA AATTCTAGCT CTGTTTTGCT GCCTCAGTTC 
CCTCCGCGGA GTTAAGCTCC TCCCAAGCTT CGATCCAGGT GACCATTCCA 
GTTGCAAGTG TGATGAAGTA AGGATCAACC TTCCCAAGTT TCTCTCTCAC 
GAGCTTGGCC AGCTCGAGGT AGCATTGCTG CACCGAAGTG CACTCTTTAG 
GAAGAGTCAC GGATTGAAAG AACGGAATCG CCTCTTCCTG CCAAAATATT 
CCGTTGTATT CCTTTTTCAG GTTCACGAAT GGGTTGCTGG CTTTGCTGTG 
CCATATGTAA GGCAAACCCG TCTTCACTCC CCATCCCATG TGGTCACATA 
TCACCTATAT TATTGGACAA ATGTAACGGT ATTACAGTAT AACCAATGCA 
CAAAAGCAAG ATAAGGAAAA AAAAAA

Gene models with high sequence identity

  1. AT3G08890.2 [+] show detail - Protein of unknown function, DUF538
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Protein of unknown function DUF538 1.8e-27
HMMPfam Alpha-1,4-glucan-protein synthase, UDP-forming 4.9e-45
Gene3D Protein of unknown function DUF538 1.5e-47

See the detailed result >

AT3G08890.2

Model type
Protein coding
Short Description
Protein of unknown function, DUF538
Computational Description
Protein of unknown function, DUF538; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF538 (InterPro:IPR007493); BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF538 (TAIR:AT5G37070.1); Has 520 Blast hits to 520 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 520; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-27-D04 introduced

  • F20610 - rosette leaf::desaturated green / rosette leaf::increased length / cauline leaf::abnormal

Mutant lines with disrupted or induced

4 mutant lines found