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  3. RAFL14-30-F18

RAFL14-30-F18

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18425)

full reading [+] show sequence

Nucleotide sequence: RAFL14-30-F18 - full reading 
ACAAGTAACC GAGTTATATA CAACGAGTCA TCAAGAGAAA GAATCCCCCC 
AAAAAATGGC CAAGTCATTG AACATCCTTA TTGCAGCTCT CTCGCTCATT 
GCATTTTCTC CTTTTTGTTT GTGTTCCAAA GCCTATGGAA GTGGCGGCTA 
TCTCTTTCCT CAGTTTTATG ACCAATCGTG TCCTAAAGCT CAAGAGATTG 
TTCAGTCCAT TGTCGCTAAA GCATTCGAAC ATGATCCTCG CATGCCTGCC 
TCCTTGCTCA GACTCCATTT CCACGACTGT TTCGTCAAGG GATGTGATGC 
TTCCATACTA TTGGACAGCA GTGGAACCAT AATCAGCGAG AAACGATCAA 
ACCCTAACAG AAACTCAGCC CGTGGTTTCG AACTCATCGA GGAAATCAAA 
CATGCCTTAG AACAAGAGTG TCCTGAAACA GTTTCTTGCG CTGATATCTT 
GGCTCTAGCC GCTAGAGACT CAACTGTTAT TACGGGTGGA CCGAGCTGGG 
AAGTACCTCT AGGAAGAAGA GACGCGAGAG GAGCAAGCTT GAGTGGTTCC 
AACAACGACA TTCCTGCTCC AAACAACACT TTCCAAACCA TCCTCACTAA 
GTTCAAGCGT CAAGGCCTTG ATCTCGTCGA TCTTGTCTCC CTCTCAGGAA 
GTCACACCAT TGGAAACTCG AGGTGCACAA GTTTCCGACA GAGGTTATAC 
AATCAATCCG GCAACGGAAA GCCTGATATG ACTCTTAGCC AATACTATGC 
AACACTATTG CGTCAACGAT GTCCGAGATC CGGAGGTGAC CAGACCCTAT 
TCTTCCTCGA CTTCGCGACA CCGTTCAAGT TTGACAACCA CTACTTCAAG 
AACCTGATAA TGTACAAAGG TCTATTGAGC TCTGATGAGA TTCTGTTCAC 
GAAGAACAAA CAGTCCAAGG AGCTGGTGGA GCTATACGCT GAGAATCAAG 
AGGCCTTCTT TGAGCAGTTT GCTAAATCGA TGGTGAAGAT GGGAAATATC 
TCTCCGTTGA CAGGCGCCAA GGGAGAGATC AGGCGTATCT GTCGGAGGGT 
TAACCATGCT TATTAATACA AATCCATCTT TATAATTTAT GTACAATATA 
ATGCTTTCGT TTCTCATTGA GTTTTCAATT TCTTTTGGCT TTGTTTGCAT 
GAGTGTGTAT CATATGTTTA TTACTCAAAT CTGATTTTGT TTCGGAAAAA 
AAAAA

Gene models with high sequence identity

  1. AT5G66390.1 [+] show detail - Peroxidase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
ProfileScan Haem peroxidase, plant/fungal/bacterial 81.006
HMMPfam Haem peroxidase, plant/fungal/bacterial 1.3e-72
superfamily Haem peroxidase 2.4e-113
PatternScan Peroxidases heam-ligand binding site 0
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Plant peroxidase 8.3e-65
FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
FPrintScan Haem peroxidase, plant/fungal/bacterial 3.1e-33
Gene3D no description 1.9e-61

See the detailed result >

AT5G66390.1

Model type
Protein coding
Short Description
Peroxidase superfamily protein
Computational Description
Peroxidase superfamily protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: endomembrane system; EXPRESSED IN: leaf apex, hypocotyl, root, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT3G50990.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-30-F18 introduced

  • F23625 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found