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  3. RAFL14-37-G21

RAFL14-37-G21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18516)

full reading [+] show sequence

Nucleotide sequence: RAFL14-37-G21 - full reading 
CTCTCTGAAA TTTCCTTTTT CCTTTTTTGT CTTTTTTTTT TTTAATTAAT 
TACTTTTCTC TGAGACACAG CAATGGCGTC GACGAAGCCC GATTCCGCAA 
TCAACCTTGA AGAAGAGGCT GAAGGCGACG GTGTAGCCGT AGACGATCCG 
ATTTTCATAC CGGAGACCAC GAACTTACTC GTCCGTTACT CGCCATTCGA 
CGACAGGGAC ATCGATTGCA ATCCTTATTT CCCTTTCACA GGCCCGATTT 
CAGATTCTGG ATCAGGTTCT TACTCGGATT CTGAGCCCGA TCCCAACAGC 
TGTCCCATCG ATTTCTTCGA TCGAGATTCT TCCGATGTTG ACGTGGCTGA 
GTACTTGGAA TCAGGAGGGC TGACCGCCGG TGATTATAAT ATTTGGGGCT 
TTTATGACCC CAAGGAAGAC GAGGAAGAGG AGGAGATAGT TTTGGGGACT 
TCCGGGTCGG ATCTGCAACC GGGTGATTCA GGGGAGCAAG GGCTTCGAGT 
GACCGGTATC GATTCAGATT CCGATTGTGA AGATGGCGTG TTTGATTTTA 
TCTCTGAGGA TAGTAGCGGG AATAGGGGAA ATGATTCGGG TCGGGTCGAG 
GTTGGTACGG GTCTTCCTCC TGTGTGGGAT CATCTCTTCG GAGAGGGAAC 
CGTGTTGGCT GATGAAGAAT GGGAGGAGGT GCAGAACGCG ATTAACTGGA 
CAGCTTTTAG TGGACCCGAA GATGAGGACG AAGAAGATGA ATTGTCTTCA 
CTATCAAGGG ATGATGAAGA AGAAGATCAT GAACTGGACT GGCAGGTTTT 
GTTAACTGTT AACAATGTTG TTAATTATAT CGAACAAGCT GAAGGAATCA 
TGCTAAACCC TGATGATATC GATCCGGATT ATTACCTGTA TCTATCTGGT 
TTGGATGAAT TTGATGAAAA TCATAGTGGA CATTATGATG CTGATGCTAT 
TCTTGGGCAA ATGTTTGATG ACGAGACTGG AATCAGGGGA AATCCTCCAG 
CAGCCAAAAG TGTAATTCAG GATCTTCCGG TTGTGGAGCT TGCTGTGGAA 
GAGTTAGACA AAGGGAACAA TGTTTGTGCG GTATGCAAAG ATGAAATGTT 
AGTGGAGGAG AAAGTAAGGA GGCTTCCTTG TAGTCATTTC TATCATGGAG 
AGTGTATCAT ACCTTGGTTG GGGATAAGGA ATACTTGCCC GGTTTGTCGG 
TATGAGCTGC CTACTGATGA TCTTGAGTAT GAAAGACATA AGAGCTCAGA 
AAGGGGCGAT ACTGGTTTGG CAAGGAACGT GTTGCCGGGT AGATATAGTT 
AATTGAATAT TTGAAGTGAT CTATTCTTCA AGTTAATAGA CATGGTTTCA 
GAGGCAAGAT CCTTGAACCA CTTTGTTTAT GGTAAGCACT TATCGTGAAT 
GTGATAATGT TTAAGTTGCA AAAAAAAAA

Gene models with high sequence identity

  1. AT3G02340.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 4.9e-16
ProfileScan Zinc finger, RING-type 11.988
Gene3D no description 0.000000000000093
HMMSmart Zinc finger, RING-type 0.00000071
HMMPanther RING ZINC FINGER PROTEIN 3.9e-32

See the detailed result >

AT3G02340.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G15820.1); Has 9104 Blast hits to 9081 proteins in 277 species: Archae - 2; Bacteria - 2; Metazoa - 2595; Fungi - 690; Plants - 4590; Viruses - 42; Other Eukaryotes - 1183 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-37-G21 introduced

  • F06148 - rosette leaf::present in fewer numbers in organism / stem::abnormal
  • F07921 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

5 mutant lines found