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  3. RAFL14-37-I17

RAFL14-37-I17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18518)

full reading [+] show sequence

Nucleotide sequence: RAFL14-37-I17 - full reading 
GGGGTCAAAT TCATTTCAAC TGATTCAATC AATTCTCATG AATTCCATCT 
TGTCAAGCGT CCTTCCTGCT CCCGAAGATC CTGTTCTCAG TAATTTTTGC 
TTGTAGAGAT GATCCTAGTC CGGTTAAGTT GAATTTGAGC GCAGGTACCT 
ATCGAACTGA GGAAGGAAAG CCTCTTGTTC TTGATGTTGT GAGAAGAGCA 
GAGCAACAGT TAGCCAACGA CCTGTCTAGG GACAAGGAAT ATCTTCCCCT 
CAATGGACTT CCTGAATTTA ATAAATTAAG TACCAAGCTC ATCTTAGGTG 
ATGATAGTCC TGCATTGAAA GAGAATAGAG TTGTTACAAC CCAATGTTTG 
TCTGGTACTG GTTCTTTGAG AGTTGGAGCT GAGTTTCTAG CAACACACAA 
CAAAGAAAGT GTCATTTTCG TTCCAAACCC AACGTGGGGG AACCATCCCC 
GTATTTTTAC TTTGGCGGGT TTGTCTGTCC AGTATTTCCG TTATTATGAT 
CCGAAGAGCC GAGGACTCGA CTTCAAAGGC ATGCTCGAGG ATCTTGGCGC 
TGCACCTCCT GGAGCTATAG TGGTACTTCA AGCTTGTGCG CATAACCCCA 
CAGGAGTTGA CCCAACATTC GAACAATGGG AAAAGATTCG ACGACTAGTG 
AGATCGAAAA GCTTATTACC TTTCTTTGAT AGTGCATATC AGGGTTTTGC 
TAGTGGTAGC CTTGACGCAG ATGCACAAGC GGTTCGTATG TTTGTAGCCG 
ATGGAGGTGA ATGTTTGATA GCTCAAAGTT ATGCCAAAAA TATGGGCCTT 
TATGGGGAGC GTATTGGCTC TCTTACGATC GTATGCACAT CAGAAGATGT 
CGCTAAGAAA GTTGAGAACC AAGTGCTACT TGTTGTGAGG CCTATGTATC 
TTACACCACC TATTCATGGT GCATCTATTG TTGCCACAAT TCTAAAAAAC 
AGTGATATGT ACAATGACTG GACCATTGAG CTGAAAGGAA TGGCTGACCG 
CATAATTAGC ATGCGTCAAC AGTTATATGC AGCTCTAGAA GCTAGAGGAA 
CACCTGGTGA TTGGAGTCAC ATTATTAAAC ATATTGGGAT GTTTACTTTT 
ACCGGATTGA GTGAGGAGCA AGTTCGCTTG ATGGCCAAAG AATATCACAT 
TTACATGACT TATGATGGGA GGATAAGCAT GGCAAGTCTA AGTTCGAAGA 
CAGTGCCTCA ACTCGCTGAT GCTATACATG CTGTTGTTAC TCGCATCGCC 
TAATTAAATT TGCGATTCTG TTCTTTTGTT GTTTAATTTA TGAACACAAT 
TAGAGAATAA AACTGCGTTC TTGGTTTACA TTTAATAAGA TAGCACAAAG 
AAGCAATATT ATGGATGATA TTGTTTCTAG TTGGTAGTCA AACCTACCAA 
AATGAGGATT GGGACCTTTA AACCAACACA GTTTTTTATA TTTTGTTTTC 
ATTTTCAATT TATATAATAA AGATTACATC AATTAACAAC AAAAAAA

Gene models with high sequence identity

  1. AT1G62800.2 [+] show detail - aspartate aminotransferase 4
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
FPrintScan Aspartate/tyrosine aminotransferase 3.1e-33
superfamily Pyridoxal phosphate-dependent transferase, major domain 5.7e-110
HMMPanther Aspartate/other aminotransferase 9.6e-240
PatternScan Aminotransferases, class-I, pyridoxal-phosphate-binding site 0
Gene3D Pyridoxal phosphate-dependent transferase, major region, subdomain 1 2.1e-105
HMMPfam Aminotransferase, class I/II 6.6e-94

See the detailed result >

AT1G62800.2

Model type
Protein coding
Short Description
aspartate aminotransferase 4
Curator Summary
Encodes aspartate aminotransferase (Asp4).
Computational Description
aspartate aminotransferase 4 (ASP4); FUNCTIONS IN: transferase activity, transferring nitrogenous groups, pyridoxal phosphate binding, transaminase activity, catalytic activity; INVOLVED IN: biosynthetic process, cellular amino acid metabolic process; LOCATED IN: cytosol; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Aminotransferase, class I/classII (InterPro:IPR004839), Pyridoxal phosphate-dependent transferase, major domain (InterPro:IPR015424), Aminotransferases, class-I, pyridoxal-phosphate-binding site (InterPro:IPR004838), Aspartate/other aminotransferase (InterPro:IPR000796), Pyridoxal phosphate-dependent transferase, major region, subdomain 1 (InterPro:IPR015421); BEST Arabidopsis thaliana protein match is: aspartate aminotransferase 2 (TAIR:AT5G19550.1); Has 5813 Blast hits to 5806 proteins in 1432 species: Archae - 0; Bacteria - 3885; Metazoa - 484; Fungi - 405; Plants - 390; Viruses - 0; Other Eukaryotes - 649 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-37-I17 introduced

  • F08801 - Specific phenotypes were NOT observed.
  • F30240 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found