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RAFL14-42-M15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18565)

full reading [+] show sequence

Nucleotide sequence: RAFL14-42-M15 - full reading 
GCTCTGTTCG GCTGCTTCAT CGAGCGGAAG TCTCTAGCCA ATTACCGTTT 
GTTCGTGGAC TCGAGATATT GTGGTTTCTT AGCAAAGAAG ATGAGTGGAG 
TTGGAGAGAA AGCTTCTGGA ACAACTAAGA CACCTGCTGA TTTCTTGAAA 
TCTATCCGTG GTAAACCAGT TGTTGTCAAG CTCAACTCTG GTGTTGATTA 
TCGAGGCATT CTTACTTGTC TTGATGGATA TATGAACATC GCAATGGAGC 
AAACCGAAGA GTATGTAAAT GGCCAGCTGA AGAACACATA TGGCGACGCT 
TTTGTCCGTG GCAACAATGT TCTTTACATC AGCACAACAA AGGGGACATT 
GTCCGATGGA GCATAGCTCT CTTTCATCAC CATGAATGTT CATCTTCTTC 
TCTACCTCTG GCATATGACA AATGTAGGAT TTGTAGCAAC CAGAGTTTAT 
CACCACTGCA TGAATTCGAC ATGTCTTTTT CTTCCGCAAC TCAGTTTGTG 
TCTAAATCAT CTCCAAAATT CTGAGATATA GCTAGATTTT TATTTGTTAT 
GAAATTTTTT TTAATCACTG TTGGTCTTTG GAGCCTAATT ATCGTGTTTT 
GATGACGCAA TCACTGCGTC ACAATCTGAT GTCATCTTAA CAATCATTAA 
TGTATTTTTT TTTTCTTTTC TCGTAATATT CTTAATTATT CTTCGACAGC 
AAAGGTTTAA AAACTCCTTA TTTCAATCAT TAATGTATTT ATGATTTGAT 
CGAATAACAA TAATATAGCT TATTTTGTTC TAAAAAAAAA A

Gene models with high sequence identity

  1. AT2G43810.2 [+] show detail - Small nuclear ribonucleoprotein family protein
    E-value: 0; Score: 99.87

 

InterPro Scan Digest

Program Description E-value
superfamily Like-Sm ribonucleoprotein (LSM)-related domain 6.1e-21
HMMPfam Like-Sm ribonucleoprotein (LSM) domain 2e-16
HMMSmart Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type 5.5e-21
Gene3D no description 2.7e-20
HMMPanther SMALL NUCLEAR RIBONUCLEOPROTEIN F (SNRNP-F) 1.1e-47

See the detailed result >

AT2G43810.2

Model type
Protein coding
Short Description
Small nuclear ribonucleoprotein family protein
Computational Description
Small nuclear ribonucleoprotein family protein; CONTAINS InterPro DOMAIN/s: Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT3G59810.1); Has 1180 Blast hits to 1180 proteins in 300 species: Archae - 305; Bacteria - 0; Metazoa - 337; Fungi - 255; Plants - 126; Viruses - 0; Other Eukaryotes - 157 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-42-M15 introduced

  • F17929 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found