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RAFL14-51-G10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18676)

full reading [+] show sequence

Nucleotide sequence: RAFL14-51-G10 - full reading 
AGTAAAACCC TCATTTCTGT TTCTCTTTTC ACTTTTAAGG AAAACCCTAG 
AATCCTCAGA AATGGCGTTG AGCACCGTGT TTCGTCGAGC TTCGTCAACA 
GTAGCCAATC TTGCTTTCCG TGCGGGTAGA TCTCCGGTTA GCTTCCGCAG 
TGGCGCTGTC TCCGTCGAGA GGCTGATTCG TGGTAGCCAC CAGATCAGGC 
GTGGATCGGT TAGTTCATTC TCAGTCTCGA GCTTTTCGAC GGAAAGTGCG 
ATCTCTAAAA CAACCGCCGA CGAGAATCTT GTTAGCGTTA TCGAATCTGA 
AATCGAATGC GCCGTCGCAG AGGAGGCTCC TCATGACACT GACTTCTTGG 
AAGATAAGCC AGAAGGGTTT CCATTTGAAA TCATTGATAA TTCAGGGGAG 
AGAACTGTGT TGCTGACAAG GAAATTTGAG GATGAAACCA TCCAAGTGGA 
AGTTGACTCT GTTGCTTCTT ATGATGATGA AGATGAAGAA GAGGAAGCAG 
AACCAAACAA TGAAGAAGAC GATGAAGATC AAGAGAGCTC GGGTAAAGTC 
CGGGTTCCGA TGGTTGTTAG TGTGCAGAAA GGTGATGGTG TGTGTCTTGA 
GTTTGGAGTC AGCGCATACC CGGATGAGAT TGTGATTGAT AGTTTATCGA 
TCAAACAACC GCAAGGATCT GATAATGACC TTGCTTACGA AGGACCTGAC 
TTTGATGACT TGGATGAGAA TTTGCAGAAG GCTTTCCACA GGTACTTGGA 
GATCAGAGGT ATTAAACCAA GCTTCACTAC CTTTCTGGCA GATTATGTGG 
CCAACAAAGA TAGCAGAGAG TATCTTCAAT GGCTCAAGGA TCTCAAGTCT 
TTTGTCGAGA AGTGAAACTG AACTTTGTTC AGAGAATAAG AGCGAGATTT 
CTTTTTGCTT TAAACTTTTG AGTTTATCTT AGATGAACTT GATATCACCA 
TGAGCAATCG TTGAAAGTGA GGTCATGTGT TATGCTTGTT AACAATATTG 
CTACATGTTT TTAATGGGTT TTTAGGTACT TTGCTAGATA TAAGATGCAA 
CTCTTTCGAG TGTCAGTTGG AAAAAATGTT ACGACCTCAA TAAAGTATAA 
TTCTTTTGCA TTTTCCAAAA AAAAAA

Gene models with high sequence identity

  1. AT5G02050.1 [+] show detail - Mitochondrial glycoprotein family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D Mitochondrial glycoprotein 5.8e-15
HMMPfam Mitochondrial glycoprotein 4.3e-30
superfamily Mitochondrial glycoprotein 5.2e-54

See the detailed result >

AT5G02050.1

Model type
Protein coding
Short Description
Mitochondrial glycoprotein family protein
Computational Description
Mitochondrial glycoprotein family protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, mitochondrial matrix; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial glycoprotein (InterPro:IPR003428); BEST Arabidopsis thaliana protein match is: Mitochondrial glycoprotein family protein (TAIR:AT3G55605.1); Has 498 Blast hits to 497 proteins in 162 species: Archae - 0; Bacteria - 2; Metazoa - 46; Fungi - 134; Plants - 219; Viruses - 0; Other Eukaryotes - 97 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-51-G10 introduced

  • F14636 - rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / cauline leaf::present in fewer numbers in organism / cauline leaf::epinastic / whole plant::decreased height / stem::present in fewer numbers in organism
  • F23531 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found