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RAFL14-53-K08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88465)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL14-53-K08 - 5 prime EST 
AACCGATCGC TTACTTAACA TACTAAGAGA GTTATTAGAA CTTGCAAAAA 
ATGGCTTCCA AGGCTTTGAT TCTGTTAGGT CTCTTCTCAG TTCTTCTCGT 
CGTCTCCGAA GTGTCTGCCG CAAGGCAATC GGGCATGGTG AAGCCAGAGA 
GTGAGGAAAC TGTGCAACCT GAAGGTTATG GCGGTGGCCA CGGAGGACAT 
GGTGGTCACG GAGGGGGAGG AGGCCACGGA CATGGAGGAC ACAACGGAGG 
AGGGGGCCAC GGACTTGACG GATACGGAGG AGGTGGAGGA CACTATGGAG 
GAGGTGGAGG ACACTACGGA GGAGGTGGAG GACACTACGG AGGAGGTGGA 
GGACACTACG GAGGAGGTGG AGGACACTAC GGAGGAGGTG GTGGAGGACA 
CGGAGGTGGA GGACACTACG GAGGTGGTGG AGGAGGATAC GGAGGTGGAG 
GAGGACACCA CGGAGGAGGA GGCCACGGGC TAAACGAACC TGTTCAGACT 
AAGCCGGGTG TTTAAAACTA TATAATATCT TCACTACCAT GCATGATTGC 
ATATATATAT ATACGCTTAT GTATTATCTA TATGCCTATA AATAAACCAT 
GGTGAGTTTG TAACGCANTG CCTTCAGAAA TGTTCGGAAT AAATTTCCAT 
AATATTAGNA TAAAAAAAAA AA

Gene models with high sequence identity

  1. AT2G05440.2 [+] show detail - GLYCINE RICH PROTEIN 9
    E-value: 0; Score: 99.69

3 prime EST [+] show sequence

Nucleotide sequence: RAFL14-53-K08 - 3 prime EST 
GGATTAATAA CATCCGAATC CAAATTAAGG TAGTCATCGG ATAAAAATTC 
ACTAAAATTC TAAATTTAGA AAAGCCACGA CCACATAAAG ACAAGGAGAT 
AGAAGAGAGG CATGACGGGC TTATACATTC CTATACACAT AAAAGAGAGA 
AAATAAAAAG AGAAATTTCG GATTCCTTCT CATTCTAATC AAGAAGAGAG 
GTTGTTTGAA GAGTTTGACT TGTCAAGAAT TGACCACATG ACGAGGACAT 
CTTCATAACC ACAAGCCATG ACATCACCTT GAAGCTCCTG TACCGTTCGT 
TTCTCATGTT CTTCTCTCGC CTTTGCGTTT GGGTGGCGGT TCGTTTGCTG 
GGGTTGGTTC AAGAACGTTG CCGCTTTCTT GAATGGTGTT GGGATCGTTT 
TCTTCCATGA AGCCATTTTT TATGC

Gene models with high sequence identity

  1. AT1G48330.1 [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); ...
    E-value: 0; Score: 98.35

AT1G48330.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G05440.2

Model type
Protein coding
Short Description
GLYCINE RICH PROTEIN 9
Computational Description
GLYCINE RICH PROTEIN 9 (GRP9); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Glycine rich protein (InterPro:IPR010800); BEST Arabidopsis thaliana protein match is: Glycine-rich protein family (TAIR:AT2G05510.6); Has 147102 Blast hits to 34686 proteins in 2088 species: Archae - 221; Bacteria - 46389; Metazoa - 53492; Fungi - 9205; Plants - 13312; Viruses - 1624; Other Eukaryotes - 22859 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-53-K08 introduced

  • F05721 - Specific phenotypes were NOT observed.
  • F11123 - Specific phenotypes were NOT observed.
  • F15809 - Specific phenotypes were NOT observed.
  • F18533 - rosette leaf::dark green / rosette leaf::present in greater numbers in organism

Mutant lines with disrupted or induced

6 mutant lines found

6 mutant lines found