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RAFL14-55-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18755)

full reading [+] show sequence

Nucleotide sequence: RAFL14-55-B03 - full reading 
ACTTGACACC TCCATCTTCT TCCTTGCTCT CTCTCTCTAT CTTTCTCCAA 
CAATCAAATA ATGGGTTCAA CAGGAAACCC TAATCCATGG GGTACAACAT 
ACGATTCATA CAGAGACTGT TCTCAAGGAG TATGCAGTGT CTATTGCCCT 
CAATGGTGTT ACGTCATCTT CCCTCCTCCT CCTTCCTTCT ATCTCGACGA 
CGAAGACGAC TCTTCCTCCT CTGATTTCTC TCCTCTCCTC ATCGCTCTCA 
TCGGAATCCT CGCTAGCGCC TTCATCCTCG TCAGCTACTA CACTCTCATC 
TCCAAATACT GCCACCGCCG TCGCCACAAC TCCTCCTCTA CCTCCGCCGC 
AGCTATAAAC AGAATCTCAT CAGATTACAC CTGGCAAGGA ACCAACAACA 
ACAACAACAA CGGAGCTACG AATCCGAATC AAACGATTGG TGGTGGTGGT 
GGCGATGGAC TCGATGAATC TCTGATTAAA TCGATAACTG TTTACAAATA 
CAGAAAGATG GATGGATTTG TTGAATCTTC AGATTGCTCT GTTTGTTTAA 
GCGAGTTTCA AGAGAACGAG AGCTTGAGAT TGTTACCTAA ATGCAACCAC 
GCGTTTCACG TTCCTTGTAT TGATACTTGG TTGAAATCTC ACTCTAATTG 
TCCTCTCTGC CGCGCCTTCA TCGTCACTTC CTCCGCCGTT GAGATCGTCG 
ATTTAACCAA TCAACAGATC GTTACGGAGA ACAACTCGAT TTCGACCGGA 
GATGATTCCG TCGTTGTCGT TAACTTAGAT CTGGAAAATT CTAGATCTCG 
GAATGAGACG GTTAATGAAG GATCGACGCC GAAACCACCG GAGATGCAGG 
ATTCAAGAGA CGGAGAAGAG CGGAGATCGG CGTCGTTAAA CTCAGGCGGC 
GGTGTGGTAT CGATCGCAGA TATACTAAGG GAGATTGAAG ACGACGAAGA 
ATCAGCGGGT GTAGGAACTT CTCGGTGGGT AGAAGAAGGG GAAGGAGAGA 
AGACGCCTCC GCCGTCAGGA TCGGCGGCGA ATCAAACAAA CGGAATTTCG 
AATTTTCTGG TTCGGAGTTC AATGGCGGCG ATGAAGAGAT CTGGTTACGA 
TAGAGCAAAA AATTACCGTT TACCGAAATA AGTTATAAAA AAAA

Gene models with high sequence identity

  1. AT3G03550.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 0.00000011
HMMPfam Zinc finger, C3HC4 RING-type 0.000000042
ProfileScan Zinc finger, RING-type 12.902
HMMPanther RING FINGER PROTEIN 38 1.5e-17
HMMPanther RING FINGER PROTEIN 6/12/38 1.5e-17
Gene3D no description 0.0000000000000091
superfamily RING/U-box 1.6e-16

See the detailed result >

AT3G03550.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G17600.1); Has 9886 Blast hits to 9859 proteins in 306 species: Archae - 0; Bacteria - 2; Metazoa - 2318; Fungi - 804; Plants - 5150; Viruses - 98; Other Eukaryotes - 1514 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-55-B03 introduced

  • F14224 - Specific phenotypes were NOT observed.
  • F17326 - Specific phenotypes were NOT observed.
  • F25733 - Specific phenotypes were NOT observed.
  • F28548 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found