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RAFL14-55-B03

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18755)

full reading [+] show sequence

Nucleotide sequence: RAFL14-55-B03 - full reading
ACTTGACACC TCCATCTTCT TCCTTGCTCT CTCTCTCTAT CTTTCTCCAA 
CAATCAAATA ATGGGTTCAA CAGGAAACCC TAATCCATGG GGTACAACAT
ACGATTCATA CAGAGACTGT TCTCAAGGAG TATGCAGTGT CTATTGCCCT
CAATGGTGTT ACGTCATCTT CCCTCCTCCT CCTTCCTTCT ATCTCGACGA
CGAAGACGAC TCTTCCTCCT CTGATTTCTC TCCTCTCCTC ATCGCTCTCA
TCGGAATCCT CGCTAGCGCC TTCATCCTCG TCAGCTACTA CACTCTCATC
TCCAAATACT GCCACCGCCG TCGCCACAAC TCCTCCTCTA CCTCCGCCGC
AGCTATAAAC AGAATCTCAT CAGATTACAC CTGGCAAGGA ACCAACAACA
ACAACAACAA CGGAGCTACG AATCCGAATC AAACGATTGG TGGTGGTGGT
GGCGATGGAC TCGATGAATC TCTGATTAAA TCGATAACTG TTTACAAATA
CAGAAAGATG GATGGATTTG TTGAATCTTC AGATTGCTCT GTTTGTTTAA
GCGAGTTTCA AGAGAACGAG AGCTTGAGAT TGTTACCTAA ATGCAACCAC
GCGTTTCACG TTCCTTGTAT TGATACTTGG TTGAAATCTC ACTCTAATTG
TCCTCTCTGC CGCGCCTTCA TCGTCACTTC CTCCGCCGTT GAGATCGTCG
ATTTAACCAA TCAACAGATC GTTACGGAGA ACAACTCGAT TTCGACCGGA
GATGATTCCG TCGTTGTCGT TAACTTAGAT CTGGAAAATT CTAGATCTCG
GAATGAGACG GTTAATGAAG GATCGACGCC GAAACCACCG GAGATGCAGG
ATTCAAGAGA CGGAGAAGAG CGGAGATCGG CGTCGTTAAA CTCAGGCGGC
GGTGTGGTAT CGATCGCAGA TATACTAAGG GAGATTGAAG ACGACGAAGA
ATCAGCGGGT GTAGGAACTT CTCGGTGGGT AGAAGAAGGG GAAGGAGAGA
AGACGCCTCC GCCGTCAGGA TCGGCGGCGA ATCAAACAAA CGGAATTTCG
AATTTTCTGG TTCGGAGTTC AATGGCGGCG ATGAAGAGAT CTGGTTACGA
TAGAGCAAAA AATTACCGTT TACCGAAATA AGTTATAAAA AAAA

Gene models with high sequence identity

  1. AT3G03550.1 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Zinc finger, RING-type 1.1e-07
HMMPfam Zinc finger, C3HC4 RING-type 4.2e-08
ProfileScan Zinc finger, RING-type 12.902
HMMPanther RING FINGER PROTEIN 38 1.5e-17
HMMPanther RING FINGER PROTEIN 6/12/38 1.5e-17
Gene3D no description 9.1e-15
superfamily RING/U-box 1.6e-16

See the detailed result >

AT3G03550.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to karrikin; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G17600.1); Has 9886 Blast hits to 9859 proteins in 306 species: Archae - 0; Bacteria - 2; Metazoa - 2318; Fungi - 804; Plants - 5150; Viruses - 98; Other Eukaryotes - 1514 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-55-B03 introduced

  • F14224 - Specific phenotypes were NOT observed.
  • F17326 - Specific phenotypes were NOT observed.
  • F25733 - Specific phenotypes were NOT observed.
  • F28548 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found