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RAFL14-55-O06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18773)

full reading [+] show sequence

Nucleotide sequence: RAFL14-55-O06 - full reading 
ATCAAATTTT TCAGCACCGA AAATGGCAAA CATCGGCGTA GTGACGACAG 
CGACTAACAA CCAGGTGATC TTCCGTAACT ACGTGAATGG ATTCCCTAAA 
GAATCCGACC TCTACATTGC AGCAAGCACC GTTGACTTAC GTGTACCTCC 
CGGATCCATG GCGGTTCTAG TGAAGAATCT CTACTTATCT TGCGATCCTC 
ATAGCCGCAC TCGCATGGGG AAGCCTGATC CCTCGTCTCC TGCTTCCATG 
GCTCATGCTT TCACTATCGG CAAGCCAATC TCTGGGTTTG GAGTGGCTAA 
AGCAATAGAT TCAGGGCACC CAAATTACAA AACAGGAGAT TTACTTTGGG 
GAAGAGTTGG TTGGGAAGAG TATAGTGTTA TTACTCCAAC TCCTTCTTCA 
CATTTCAAGA TTCATCACAC CGATGTTCCA TTATCTTTCT ACACTGGACT 
TCTTGGTATT CCGGGTCTCA CTGCGTATAT TGGGTTTTAC GAGATATGTT 
CTCCGAAAAA AGGAGAGACT GTTTTTGTAT CAGCTGCATC TGGCGCAGTA 
GGTCAACTCG TGGGACAGTT TGCGAAGATG GCGGGATGCT ATGTCGTTGG 
AAGCGCTAGC AGTGAAGAGA AGGTTGATCT TCTCAAGACT AAGTTTGGGT 
ATGATGACGC TTTCAATTAT AAGGAAGAAA AGGATCTTAG TGCTGCCCTA 
AAGAGGTGTT TCCCAGAAGG AATAGACATA TACTTTGAGA ACGTGGGAGG 
TAAAATGTTA GAGGCAGTGC TCGAAAACAT GAGGACACAT GGCCGAATCG 
CAGCGTGTGG AATGATATCA CAATACAATC TAAAGAAACC AGAAGTTTTA 
CATAACACAG CCACCATTGT TCACAAACGC ATCCGTGTTC AAGGTTTTGC 
TGCTGTCGAA TTCTTTGATA GGTACTCCAA GTTTTTGGAC TTCATACTTC 
CACATGTAAG AGAAGGGAAG TTAACATATG TTGAGGATAT ATCCCAAGGA 
CTTGAGAATG GACCTTCTGC TTTGATTGGA CTCTTCCACG GTAAGAACGT 
CGGGAAACAA CTTGTCGAAG TTGCTCGCGT GTGAGATTTA AACTAACAAA 
TGTTTTATTA CCGTTTGGTT TTAGTTGCTG CTGGAAATAA GATCGGTTTG 
TACAAGCTGT GACAATGTTT TGTTTGTTCG TCAGAAATAA ATGGACTTTG 
TTTGTCTGTA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G38000.1 [+] show detail - Zinc-binding dehydrogenase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
Gene3D NAD(P)-binding domain 1.4e-46
HMMSmart Polyketide synthase, enoylreductase 0.00082
superfamily NAD(P)-binding domain 4.3e-51
superfamily GroES-like 3.4e-27
superfamily GroES-like 0.00000041
HMMPanther ALCOHOL DEHYDROGENASE 8.1e-156
HMMPanther Alcohol dehydrogenase superfamily, zinc-containing 8.1e-156
HMMPfam Alcohol dehydrogenase, zinc-binding 6.9e-24

See the detailed result >

AT5G38000.1

Model type
Protein coding
Short Description
Zinc-binding dehydrogenase family protein
Computational Description
Zinc-binding dehydrogenase family protein; FUNCTIONS IN: oxidoreductase activity, binding, zinc ion binding, catalytic activity; INVOLVED IN: response to oxidative stress; CONTAINS InterPro DOMAIN/s: GroES-like (InterPro:IPR011032), NAD(P)-binding domain (InterPro:IPR016040), Alcohol dehydrogenase, C-terminal (InterPro:IPR013149), Alcohol dehydrogenase superfamily, zinc-containing (InterPro:IPR002085); BEST Arabidopsis thaliana protein match is: Zinc-binding dehydrogenase family protein (TAIR:AT5G37940.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-55-O06 introduced

  • F18043 - seed::decreased size

Mutant lines with disrupted or induced

1 mutant line founds