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RAFL14-67-F05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88483)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL14-67-F05 - 5 prime EST 
TCTCTCAACA ACTACTTGTT TAGAGAGAGT CCCACCACCA CCACTACCAC 
AATCCCAATG GCTTCACCAA CTCTTACTCT CCTCCTCCTC CTCACCACCG 
TCTCCTTCTT CATCTCCTCC TCCGCAGATC CTGACATGCT TCAAGATCTC 
TGCGTCGCTG ATCTTCCCTC TGGAATCAAA ATCAATGGCT TCCCTTGCAA 
AGACGCAGCT ACAGTCACAT CAGCCGATTT CTTCTCACAA GGATTAGCTA 
AACCAGGTCT TACCAACAAC ACATTCGGTG CCTTAGTCAC AGGAGCTAAC 
GTTATGACAA TCCCAGGACT CAACACACTT GGTGTCTCCC TCTCTCGTAT 
CGACTACGCA CCAGGAGGCT TAAACCCACC TCACACCCAC CCACGTGCCA 
CTGAGGTCGT TTTCGTCCTC GAAGGAACAC TTGACGTTGG GTTTCTCACT 
ACTGCCAATA AGCTAATCTC TCAATCTCTC AAGAAAGGAG ATGTTTTTGC 
TTTNCCCNAA NGGACTTGTC CATTTCCAGA A

Gene models with high sequence identity

  1. AT1G09560.1 [+] show detail - germin-like protein 5
    E-value: 0; Score: 99.25

3 prime EST [+] show sequence

Nucleotide sequence: RAFL14-67-F05 - 3 prime EST 
GAACAAAAAA TAATATGGAT TATACAAGAA GAGGAATACA TGAGACTATG 
GAGCTCAAAT GCACACTGAA GATCATCAGC TTATTGTTCC TTTTTTATTA 
CAGAAGAAAA ATCAAAGAAG ATAAAAAGAT CTTCCCTTTA GAAAAAAACA 
GAACTGTAGT AATGAACTAT AAAGGAAGGG TGATGATCAT TTCTTGGGTT 
GGAACTTGGA TTTGATGTGT TTAAGAGTTC CTGGAGAAGT CTGAAAGGCT 
TGAGCCAAGA TGTTGTCAGG AACAGGAGGA GTAGAACCAA ACAAAGTAGC 
ACCAAGAGAT TGAGTTCCGG GAAGCTTGAC TATTGAAAGC TGGAATAACA 
GAAGCAGGGA CCCTCACCAT TGTTCTTCTG GAAATGGAAA AGTCCTTTGG 
GGAAAGCAAA ACATCTCCTT TCTTGAGAGA TTGAGAGAT

Gene models with high sequence identity

  1. AT1G09560.1 [+] show detail - germin-like protein 5
    E-value: 0; Score: 97.27

AT1G09560.1

Model type
Protein coding
Short Description
germin-like protein 5
Curator Summary
germin-like protein (GLP5)
Computational Description
germin-like protein 5 (GLP5); FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: response to cold; LOCATED IN: cell wall, nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), Germin (InterPro:IPR001929), RmlC-like jelly roll fold (InterPro:IPR014710), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: germin-like protein 10 (TAIR:AT3G62020.1); Has 1766 Blast hits to 1756 proteins in 200 species: Archae - 0; Bacteria - 219; Metazoa - 1; Fungi - 67; Plants - 1458; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-67-F05 introduced

  • F27748 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found