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RAFL14-70-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda18962)

full reading [+] show sequence

Nucleotide sequence: RAFL14-70-M19 - full reading 
CTCCTTTGCA CTCCATTTTT ATTCTCGATT CTCTTCTCTC CCGATAAAGA 
AGCTCTCGCT TTGTGTTGTC CGTCCTTCTT CCAGGTTTTC TCGTCTCTGA 
CGCATGGCTT CTAAGAGGAT CTTGAAGGAG CTCAAGGATC TGCAGAAGGA 
TCCTCCTTCA AACTGCAGCG CTGGTCCGGT GGCTGAGGAC ATGTTCCATT 
GGCAAGCCAC TATCATGGGA CCTCCTGAAA GTCCGTATGC CGGAGGAGTG 
TTTTTGGTTT CTATTCATTT CCCTCCGGAT TATCCTTTCA AGCCACCAAA 
GGTGTCTTTT AAGACTAAGG TGTACCATCC AAACATCAAT AGCAATGGAA 
GTATTTGCCT TGATATTTTG AAAGAGCAAT GGAGCCCTGC TCTTACTATC 
TCTAAGGTTC TGTTGTCGAT TTGCTCGCTG TTGACTGACC CAAACCCAGA 
TGATCCTCTT GTGCCGGAGA TAGCTCACAT GTACAAGACA GATAGATCCA 
AGTACGAGTC AACTGCGAGA AGCTGGACAC AAAAGTACGC AATGGGTTGA 
TGATATAAGA CAAAGCAAAG GATATGTTAT TGCGCATCGG AATAAAATAA 
TAACTTAAAA AAAATGCACT TGTTTGGTTT ATCAAACGTT AGCAAGTATC 
GAACAACTTA GCTGCTCTTA CTCCTCTTCT GTTCTGATCA CTATAAACTA 
GTATTAATTT CAAAAAAAAA A

Gene models with high sequence identity

  1. AT3G08690.1 [+] show detail - ubiquitin-conjugating enzyme 11
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
PatternScan Ubiquitin-conjugating enzyme, E2 0
Gene3D Ubiquitin-conjugating enzyme/RWD-like 6.5e-61
Coil coiled-coil 0
HMMPfam Ubiquitin-conjugating enzyme, E2 1.6e-53
ProfileScan Ubiquitin-conjugating enzyme, E2 48.796
HMMSmart Ubiquitin-conjugating enzyme, E2 1.4e-80
superfamily Ubiquitin-conjugating enzyme/RWD-like 9.1e-69
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.2e-110
HMMPanther UBIQUITIN-CONJUGATING ENZYME E2 4.2e-110

See the detailed result >

AT3G08690.1

Model type
Protein coding
Short Description
ubiquitin-conjugating enzyme 11
Computational Description
ubiquitin-conjugating enzyme 11 (UBC11); CONTAINS InterPro DOMAIN/s: Ubiquitin-conjugating enzyme/RWD-like (InterPro:IPR016135), Ubiquitin-conjugating enzyme, E2 (InterPro:IPR000608); BEST Arabidopsis thaliana protein match is: ubiquitin-conjugating enzyme 10 (TAIR:AT5G53300.4); Has 10847 Blast hits to 10798 proteins in 402 species: Archae - 0; Bacteria - 4; Metazoa - 4764; Fungi - 2349; Plants - 1956; Viruses - 26; Other Eukaryotes - 1748 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-70-M19 introduced

  • F04040 - Specific phenotypes were NOT observed.
  • F07043 - Specific phenotypes were NOT observed.
  • F08203 - Specific phenotypes were NOT observed.
  • F18921 - rosette leaf::abnormal / rosette leaf::abnormal / cauline leaf::decreased size / stem::decreased thickness / stem::abnormal / sporophyte vegetative stage::decreased speed
  • F27011 - Specific phenotypes were NOT observed.
  • F27037 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found