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  3. RAFL14-84-B09

RAFL14-84-B09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12468)

full reading [+] show sequence

Nucleotide sequence: RAFL14-84-B09 - full reading 
CTGGAATTTG AGTAAAAGCA AGAAAAAAAG TCAACCGTTG CAACAAACTC 
TTAAAAAGAA GCAAAGTAGT AGCAGAAGAA GAAGAAGAAG AAGAAGAAAA 
GAAAATGGCA GGAGGGTCGT TTGGTCCGAC CGGTGTGGCT AAGGAGAGAG 
CAGAACAATA CCAAGGGAAA GTCACTAGTT ATGTTATAAT CGCTTGCCTT 
GTTGCAGCTA TTGGTGGATC CATCTTTGGA TATGACATTG GAATCTCAGG 
AGGAGTTACA TCGATGGATG AGTTTCTTGA GGAGTTTTTC CACACGGTTT 
ATGAGAAGAA GAAGCAAGCT CATGAAAGTA ATTACTGCAA ATATGATAAT 
CAAGGCTTAG CTCTGATGAA TCCCCTAATG ATTTTGGTAA AAATCATTAA 
GTTAAGGTGG ATACACATCT TGTCATATGA TCAAATGGTT TCGCGAAAAA 
TCAATAATCA GACAACAAGA TGTGCGAACT CGATATTTTA CACGACTCTC 
TTTACCAATT CTGCCCCGAA TTACACTTAA AACGACTCAA CAGCTTAACG 
TTGGCTTGCC ACGCATTACT TGACTGTAAA ACTCTCACTC TTACCGAACT 
TGGCCGTAAC CTGCCAACCA AAGCGAGAAC AAAACATAAC ATCAAACGAA 
TCGACCGATT GTTAGGTAAT CGTCACCTCC ACAAAGAGCG ACTCGCTGTA 
TACCGTTGGC ATGCTAGCTT TATCTGTTCG GGCAATACGA TGCCCATTGT 
ACTTGTTGAC TGGTCTGATA TTCGTGAGCA AAAACGACTT ATGGTATTGC 
GAGCTTCAGT CGCACTACAC GGTCGTTCTG TTACTCTTTA TGAGAAAGCG 
TTCCCGCTTT CAGAGCAATG TTCAAAGAAA GCTCATGACC AATTTCTAGC 
CGACCTTGCG AGCATTCTAC CGAGTAACAC CACACCGCTC ATTGTCAGTG 
ATGCTGGCTT TAAAGTGCCA TGGTATAAAT CCGTTGAGAA GCTGGGTTGG 
TACTGGTTAA GTCGAGTAAG AGGAAAAGTA CAATATGCAG ACCTAGGAGC 
GGAAAACTGG AAACCTATCA GCAACTTACA TGATATGTCA TCTAGTCACT 
CAAAGACTTT AGGCTATAAG AGGCTGACTA AAAGCAATCC AATCTCATGC 
CAAATTCTAT TGTATAAATC TCGCTCTAAA GGCCGAAAAA ATCAGCGCTC 
GACACGGACT CATTGTCACC ACCCGTCACC TAAAATCTAC TCAGCGTCGG 
CAAAGGAGCC ATGGGTTCTA GCAACTAACT TACCTGTTGA AATTCGAACA 
CCCAAACAAC TTGTTAATAT CTATTCGAAG CGAATGCAGA TTGAAGAAAC 
CTTCCGAGAC TTGAAAAGTC CTGCCTACGG ACTAGGCCTA CGCCATAGCC 
GAACGAGCAG CTCAGAGCGT TTTGATATCA TGCTGCTAAT CGCCCTGATG 
CTTCAACTAA CATGTTGGCT TGCGGGCGTT CATGCTCAGA AACAAGGTTG 
GGACAAGCAC TTCCAGGCTA ACACAGTCAG AAATCGAAAC GTACTCTCAA 
CAGTTCGCTT AGGCATGGAA GTTTTGCGGC ATTCTGGCTA CACAATAACA 
AGGGAAGACT TACTCGTGGC TGCAACCCTA CTAGCTCAAA ATTTATTCAC 
ACATGGTTAC GCTTTGGGGA AATTATGAGG GGATCTCTCA GGGCTTAGCT 
GCTTTCACTT CTTCACTCTA CTTAGCTGGT TTGGTTTCGA CTCTCGTGGC 
TTCACCCATC ACTAGGAACT ACGGTAGGCG TGCGAGTATT GTTTGTGGTG 
GAATCAGCTT TCTTATTGGA TCTGGTTTGA ATGCTGGAGC TGTGAACTTA 
GCTATGCTTC TTGCCGGACG GATCATGCTT GGTGTTGGTA TTGGATTTGG 
AAATCAGGCG GTTCCTTTGT ATTTATCAGA AGTGGCACCA ACTCATCTAC 
GAGGTGGTTT AAACATGATG TTTCAGCTAG CTACAACTAT CGGGATCTTT 
ACAGCGAACA TGGTTAATTA CGGTACTCAA CAGCTTAAGC CTTGGGGATG 
GAGACTCTCT CTTGGTTTAG CTGCTTTTCC AGCTCTGCTT ATGACGCTTG 
GCGGGTATTT CTTACCCGAG ACACCAAACA GTTTGGTCGA AAGAGGATTA 
ACAGAGAGAG GTCGACGAGT CTTAGTGAAG CTAAGAGGAA CAGAAAACGT 
CAACGCCGAG CTTCAAGACA TGGTAGATGC GAGTGAGCTT GCGAATTCCA 
TCAAACATCC ATTCAGAAAC ATCTTGCAGA AACGACACAG GCCTCAGCTA 
GTTATGGCTA TTTGCATGCC AATGTTTCAG ATACTCACAG GGATAAACTC 
CATTCTCTTC TACGCACCTG TTCTGTTCCA GACAATGGGG TTTGGAGGAA 
ACGCATCTCT CTATTCATCA GCTTTAACAG GAGCTGTTCT TGTCCTATCA 
ACATTTATTT CCATAGGATT AGTAGACAGA TTGGGACGAA GAGCTCTTCT 
CATAACTGGA GGAATACAAA TGATAATCTG TCAAGTCATA GTAGCAGTGA 
TCTTAGGAGT GAAATTTGGA GACAACCAAG AGCTATCAAA AGGGTACTCA 
GTGATCGTAG TCATCTTCAT CTGCCTCTTT GTTGTAGCGT TCGGATGGTC 
ATGGGGTCCT CTAGGTTGGA CCATACCTAG CGAAATCTTT CCGTTAGAGA 
CTCGTTCAGC GGGGCAGAGT ATCACAGTAG CTGTAAATCT CCTCTTCACT 
TTCATCATAG CTCAAGCTTT CCTTGGTCTC CTCTGTGCAT TCAAGTTTGG 
AATCTTCCTC TTCTTTGCTG GTTGGGTGAC AGTAATGACT ATCTTTGTGT 
ATTTCCTGTT GCCTGAAACC AAAGGAGTTC CAATAGAAGA GATGACACTC 
TTATGGAGTA AACATTGGTT CTGGAAAAAA GTATTACCTG ATGCAACAAA 
TCTTGAAGAT GAGAGCAAGA ATGTATCTGT TTAAAGAGAA TATAAACTGA 
TTCAAGAAAC TTATGTTTGT ATTACTATAA GGTTTTTTAT TGCATAAGGA 
GAGATTTGAA TCCCAAAAAA AAAAAAAAAA

Gene models with high sequence identity

  1. AT4G02050.1 [+] show detail - sugar transporter protein 7
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Transposase, IS4-like 2.9e-28
HMMPfam General substrate transporter 5.8e-06
HMMPfam General substrate transporter 1.1e-112
HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 2e-42
HMMPanther SUGAR TRANSPORTER 2e-42
HMMPanther MONOSACCHARIDE TRANSPORTER, PLANT 1.4e-172
HMMPanther SUGAR TRANSPORTER 1.4e-172
HMMPanther TRANSPOSASE RELATED 1.2e-125
PatternScan Sugar transporter, conserved site 0
PatternScan Sugar transporter, conserved site 0
ProfileScan MFS 43.769
FPrintScan Sugar/inositol transporter 1e-23
FPrintScan Sugar/inositol transporter 1e-23
FPrintScan Sugar/inositol transporter 1e-23
FPrintScan Sugar/inositol transporter 1e-23
superfamily Polynucleotidyl transferase, ribonuclease H fold 1.6e-62
superfamily Major facilitator superfamily, general substrate transporter 1.6e-57
HMMTigr Sugar/inositol transporter 3.4e-85
Coil coiled-coil 0

See the detailed result >

AT4G02050.1

Model type
Protein coding
Short Description
sugar transporter protein 7
Computational Description
sugar transporter protein 7 (STP7); FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: plasma membrane, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196); BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT5G26340.1); Has 26348 Blast hits to 25870 proteins in 1897 species: Archae - 376; Bacteria - 11847; Metazoa - 3711; Fungi - 6732; Plants - 2516; Viruses - 0; Other Eukaryotes - 1166 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL14-84-B09 introduced

  • F04249 - Specific phenotypes were NOT observed.
  • F04714 - Specific phenotypes were NOT observed.
  • F09211 - seed::increased size / seed::decreased width

Mutant lines with disrupted or induced

7 mutant lines found