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  3. RAFL15-06-D14

RAFL15-06-D14

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19148)

full reading [+] show sequence

Nucleotide sequence: RAFL15-06-D14 - full reading 
TCATCGCTGT CTGGAACAGC GAAACCTCCA TTACCTTCGT CTTTCTTCCT 
CAGTCGCCCT ACAATGGCTT TGCCTTTGTC TGGCACGCGC CACCTCACGC 
GCGCTCTCCT CTCTAATGTC ACTCTTATGG CTCCTCCTCG GATTCCTTCC 
TCTGTTCACT ACGGTGGATC TCGGTTAGGT TGTTCGACCC GGTTCTTCTC 
AATTCGATGT GGAGCTAACC GGTCAGGTTC TACTTACTCG CCGCTTAACT 
CTGGCTCTAA CTTTAGTGAT CGGCCTCCGA CGGAGATGGC TCCTTTGTTT 
CCGGGATGCG ATTATGAGCA CTGGCTTATT GTTATGGATA AACCTGGCGG 
GGAAGGCGCG ACTAAGCAGC AGATGATTGA TTGTTACATT CAAACCCTAG 
CGAAAGTCGT TGGAAGTGAG GAAGAGGCGA AGAAGCGAAT CTACAATGTT 
TCATGTGAGA GGTATTTAGG GTTTGGTTGT GAGATTGATG AAGAGACATC 
CACTAAGCTT GAAGGTTTAC CAGGTGTTCT GTTTGTGCTT CCAGATTCCT 
ATGTGGATCC TGAAAACAAA GATTATGGAG CTGAGCTGTT TGTTAATGGA 
GAGATAGTCC AACGATCACC AGAGAGGCAG AGGCGGGTTG AGCCACAGCC 
GCAGAGAGCC CAAGATAGAC CGAGATACAA TGACAGAACT CGTTACTCTC 
GCCGCAGAGA AAACACAAGA TGAACTGTAA CTGAAGATGG TATACATACA 
CCTAAGCTAA GCCAGTATGA GGATGATGAT GATGATGATG ATAATGGTGG 
TGAGGATGAT GTTACTGCCG CCACACGGGG GCTCTGTATT CCAGTCCGTT 
GCAGTTAATG GACCGGGCTT ACTTTGGATA TTGTTGAAAT TCTAAATTTT 
GTTTCTATGT AACAATTTTA TTTAATAATG TAAATTGAGG TTTCACTGTT 
TTAGGAAATT ACTTTGGGTA AAAAAAAAA

Gene models with high sequence identity

  1. AT2G33430.1 [+] show detail - differentiation and greening-like 1
    E-value: 0; Score: 99.79

 

InterPro Scan Digest

See the detailed result >

AT2G33430.1

Model type
Protein coding
Short Description
differentiation and greening-like 1
Computational Description
differentiation and greening-like 1 (DAL1); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: plastid organization, endonucleolytic cleavage of tetracistronic rRNA transcript (SSU-rRNA, LSU-rRNA, 4.5S-rRNA, 5S-rRNA); LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: plastid developmental protein DAG, putative (TAIR:AT1G32580.1); Has 251 Blast hits to 228 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 251; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-06-D14 introduced

  • F04016 - Specific phenotypes were NOT observed.
  • F16150_77 - Specific phenotypes were NOT observed.
  • F18213 - Specific phenotypes were NOT observed.
  • F23031 - Specific phenotypes were NOT observed.
  • F25830 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

12 mutant lines found