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RAFL15-14-A05

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19175)

full reading [+] show sequence

Nucleotide sequence: RAFL15-14-A05 - full reading 
TGGTTTTGTT TTTGAATCAG ATCCTTATTC TTGACCTTTC GATCAGATTC 
ATGGCAACGA CTCAATCACA CACCTCAGAT CTTACTTCAG AGGAGCAACC 
TGCTAGTTTG GACATCATGA AGGAGCAGAC TGTCCCGGCA AACAACGAGA 
CATCAGCCTC TTTTAAGTCC TCCCAGGAAG CTCCAGTTGT AGTTCATCCA 
GCAAAAGTTG CTCCACTTAC TGGACCTTAT GGTTTAGCCG GTGATTTTGC 
CGGACACTTA CCTAGCAGCA TCCTCTCTCC TCAAGCACAA GGCTTTTACT 
ATAGAGGTTA TGAAAACCCC ACAGGCGAAT GGGACGAGTA TTCCTCGTAT 
GTCAATGTTG AAGGATTGGA CATCACATCT CCTGTTGGCT TCAATGAGAA 
TGCTTCTCTG GTCTACCAAA CGGGATATGG ATACAACCCT CAAATGCCAT 
ATGGGCCATA TTCCCCTGCA GCAAGTCCCT TGCCTTCTGA GGGACAGTTG 
TATTCTCCAC AACAGTTTCC GTTTTCAGGG GCATCACCGT ATTACCAGCA 
GGTAGTTCCT CCTAGCATGC AATATATTAC TTCTCCAACT CAGCCCGAGC 
TCACCAGCCT TGTCGGTGTT GACCAACAAG GTGATAACAT CGGACCACGC 
CAATCCTACC ATCCTCATCC CATTGGACCG TTTAATGGAA ACCAGCCAAA 
CCTTGGTTTT CCTGAATGGC AGCAAGGTTT TGACGGGGGA ATATGGTCGG 
ATTGGTCCAA GCCTTCTGAT ATGCACAGGC ATTCTTCTTC TATTTCTCCG 
GCTTTATCTC CTCAGCCACT CGGCTCATAT GGATCATATG GCCAGAACAT 
ACCCATGGGG TCACAGCGAC AGAGATCATT TTACGGTTTT GGATCTGGTT 
CGAACTCTTA TAACAGAGGT TATATGCATA GTGGTGGTCG TGGCCAGGGT 
TCTAACTATG GAAGTAGACT AATTTCTAAT GTGGGTATGG GAAACCAAGG 
CTGGATTGGG GTTGACAACA GTCGAGGGCG TGGAAGGGTT AGTGATCCAT 
CTTTGGGTGG TGCTTATAAT GGTACTTTTG ATATCCTCAA TGAGCAAAAT 
CGAGGACCAA GGGCTTCAAA GCCCAAGACT CAGGTCTTAG AGGAGCTTGA 
TTCTGCTGCT GATTCTAAGA AAAATAACAA AGGCAGTGCA AAGGAGCACG 
AGGAATCCAA CAACGCAGAC TTTGTCACCG ACTACACTAA CGCCAAGTTG 
TTCATCATCA AGTCTTACAG TGAAGACAAT GTTCACAAAA GCATCAAATA 
CAATGTATGG GCTAGCACCC CTAATGGCAA CAAAAAGCTT GACGCTGCTT 
ATCGTGAGGC CAAGGATGAG AAAGAACCGT GTCCACTTTT TCTTCTGTTC 
TCGGTAAATG CGAGCTCTCA ATTCTGTGGT GTAGCAGAGA TGGTTGGACC 
TGTTGATTTT GAGAAGAGCG TTGATTACTG GCAACAAGAT AAATGGAGTG 
GACAGTTCCC AGTGAAGTGG CACATTATCA AAGATGTTCC AAACAGCCAG 
TTCCGCCACA TTATATTGGA AAACAATGAC AATAAGCCTG TGACTAATAG 
TCGAGACACC CAAGAAGTAA AACTGGAACA GGGCATCGAG ATGCTGAAGA 
TCTTCAAGAA CTACGACGCT GACACGTCAA TCTTGGATGA TTTCGGGTTT 
TATGAAGAGC GGGAGAAAAT TATACAAGAC CGGAAGGCAA GAAGACAGCC 
AAGCTTGCCA TCTGCAGGAG TAGTAGCAGG AGAAAATGAA CATAAACCTG 
CTTCTGCTGC ATTACCCACA GACTTCATGA AGAACATGTC CAAGAGTTTT 
GCGCAAGTTG TCCGCTTGGA CGAAGGCAGC AAAGAAGCAG TCAAGGCCAG 
TTCATCTCCA GATGCAATTA CAACAGCAGC AGTCTCTTCT GGTCAATCCA 
ACTAGTAAGT AAAAGACATC AATTAGCAAA GACTATGTTT TCAAATTCCA 
TAATATGATC TTTTGTTTGT TCTAAGAAGG TATTTCAAAC GAAAAAAAAA 
A

Gene models with high sequence identity

  1. AT3G13060.2 [+] show detail - evolutionarily conserved C-terminal region 5
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
ProfileScan YTH domain 50.402
HMMPfam YTH domain 1.6e-29
HMMPanther YTH DOMAIN-CONTAINING 5.1e-112
HMMPanther YTH domain 5.1e-112

See the detailed result >

AT3G13060.2

Model type
Protein coding
Short Description
evolutionarily conserved C-terminal region 5
Computational Description
evolutionarily conserved C-terminal region 5 (ECT5); CONTAINS InterPro DOMAIN/s: YTH domain (InterPro:IPR007275); BEST Arabidopsis thaliana protein match is: evolutionarily conserved C-terminal region 2 (TAIR:AT3G13460.4); Has 1288 Blast hits to 1234 proteins in 189 species: Archae - 0; Bacteria - 12; Metazoa - 605; Fungi - 140; Plants - 385; Viruses - 0; Other Eukaryotes - 146 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-14-A05 introduced

  • F01017 - Specific phenotypes were NOT observed.
  • F12516 - Specific phenotypes were NOT observed.
  • F13325 - rosette leaf::decreased size / rosette leaf::increased width / sporophyte vegetative stage::decreased speed / stem::present in fewer numbers in organism / rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::present in greater numbers in organism / stem::decreased thickness / cauline leaf::decreased width / whole plant::decreased height / flower::abnormal / fruit::decreased length / stem::abnormal
  • F14011 - Specific phenotypes were NOT observed.
  • F19742 - Specific phenotypes were NOT observed.
  • F25103 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found