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  3. RAFL15-17-F07

RAFL15-17-F07

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19185)

full reading [+] show sequence

Nucleotide sequence: RAFL15-17-F07 - full reading 
ACTGTTAACG GTCGGAATCT AAAAAATGTC TCCTAACTAC TCCTTCTTCT 
TCTTCATCTT CTTCCTCACT TCACACTCTT CTGTTTTCTC CAGAATCTTA 
CCAGAGACCT CCACAACCAC TACCTCAATT CTCAATGTCG CTGACTCCAT 
CCACAGAACC AAGTATACGT CGTCGTTTCG GTTAAACCAG CAAGAAGAAC 
AGACTCACTC TGCTTCTTCT TCTTTCAGCT TGCAGCTTCA TTCACGAGTT 
TCCGTCCGAG GAACTGAACA CTCAGACTAT AAGTCACTCA CACTAGCCAG 
ACTCAACCGT GACACAGCCC GAGTCAAATC TCTCATAACC CGTTTAGATC 
TAGCCATCAA CAACATATCC AAAGCAGATC TCAAACCCAT CAGCACAATG 
TACACCACTG AGGAACAAGA TATCGAAGCT CCTTTAATCT CCGGCACGAC 
TCAAGGAAGT GGCGAGTACT TCACACGCGT CGGTATCGGA AAACCGGCGC 
GTGAAGTTTA TATGGTTCTA GATACTGGAA GTGACGTGAA CTGGCTACAA 
TGTACTCCTT GCGCTGACTG TTACCACCAA ACCGAACCAA TCTTCGAGCC 
ATCGTCGTCT TCTTCTTACG AGCCTCTCTC TTGTGACACT CCACAGTGCA 
ATGCCCTTGA AGTCTCAGAA TGTAGAAACG CCACGTGTCT TTACGAGGTT 
TCTTACGGTG ATGGTTCTTA CACCGTTGGA GATTTCGCCA CCGAGACTCT 
CACAATCGGC TCAACTCTAG TTCAAAACGT CGCCGTTGGT TGTGGACACA 
GCAACGAAGG GTTGTTCGTC GGCGCCGCCG GTTTACTTGG ACTCGGCGGT 
GGTTTGTTAG CTCTTCCGTC GCAGCTCAAC ACGACGTCGT TCTCGTACTG 
TCTCGTTGAC CGTGACTCAG ACTCGGCTTC GACCGTGGAT TTCGGGACTT 
CTCTTTCTCC TGACGCCGTC GTGGCTCCGT TGCTACGTAA CCACCAGCTC 
GACACGTTTT ACTACCTAGG CCTCACCGGA ATAAGCGTCG GCGGCGAGTT 
GCTTCAGATT CCTCAGTCTT CTTTCGAGAT GGACGAGTCA GGCAGCGGTG 
GGATCATCAT CGACTCAGGA ACCGCCGTGA CTCGTCTCCA GACCGAAATC 
TATAACTCGC TTAGAGACTC GTTCGTGAAA GGAACGTTGG ACTTGGAAAA 
AGCAGCCGGG GTGGCGATGT TTGACACGTG TTATAACCTT TCGGCTAAGA 
CGACGGTAGA AGTCCCGACC GTGGCTTTTC ATTTCCCCGG CGGGAAGATG 
TTGGCTTTGC CGGCGAAGAA CTACATGATT CCGGTTGACT CGGTGGGGAC 
ATTTTGTTTG GCATTTGCAC CGACGGCGAG TTCACTAGCG ATTATCGGAA 
ACGTGCAGCA ACAAGGGACA CGTGTCACTT TCGATTTGGC AAATTCTCTC 
ATTGGATTCT CGTCTAATAA ATGCTAAGCT GTTTTCATCA AAAAAAACAA 
AAATGCTAAG CTGTTTTTTC TATAAATATA TTTGAGTTAC AATGAAAAGG 
AAAAGTCACT TAAAAGATAG TAATGTTAAG TTAGAGTACT GTACTACTGT 
TTGGTTGTGT TTGTTTCTTG TACTTGTTGT TGCAATGCAT AGAGTGAAAA 
AGAGTAAAAA AA

Gene models with high sequence identity

  1. AT1G25510.1 [+] show detail - Eukaryotic aspartyl protease family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther CHLOROPLAST NUCLEIOD DNA-BINDING-RELATED 2.4e-128
HMMPanther Peptidase A1 2.4e-128
superfamily Peptidase aspartic 7.9e-103
Gene3D Peptidase aspartic, catalytic 1.7e-13
Gene3D Peptidase aspartic, catalytic 2.1e-48
HMMPfam Peptidase A1 7.8e-22

See the detailed result >

AT1G25510.1

Model type
Protein coding
Short Description
Eukaryotic aspartyl protease family protein
Computational Description
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT3G18490.1); Has 4139 Blast hits to 4120 proteins in 342 species: Archae - 0; Bacteria - 0; Metazoa - 1183; Fungi - 740; Plants - 2035; Viruses - 0; Other Eukaryotes - 181 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-17-F07 introduced

  • F00803 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found