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  3. RAFL15-22-L08

RAFL15-22-L08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12908)

full reading [+] show sequence

Nucleotide sequence: RAFL15-22-L08 - full reading 
AGCATTTTTC AGCACTCCTT TCCTTTCCCC CACAAACTAA ACAAAAAACC 
ATTAACAAAA AAACCATTCA CAAAAAAAAT AGAGAGAATC ATCTGAGAGA 
GTAGTAGTGA TGATATGATC GCTTCTTCTC CTACAATCTC AGAAACCTCC 
GATCACGGTT TTAGATATCT TCTACAACGG ATACAATGGA GAGCACCGAT 
TCTTCCGGTG GTCCACCACC GCCACAACCT AACCTTCCTC CAGGCTTCCG 
GTTTCACCCT ACCGACGAAG AGCTTGTTGT TCACTACCTC AAACGCAAAG 
CAGCCTCTGC TCCTTTACCT GTCGCCATCA TCGCCGAAGT CGATCTCTAT 
AAATTTGATC CATGGGAACT TCCCGCTAAA GCATCGTTTG GAGAACAAGA 
ATGGTACTTC TTTAGTCCAC GAGATCGGAA GTATCCAAAC GGAGCAAGAC 
CAAACAGAGC GGCGACTTCA GGTTATTGGA AAGCGACCGG TACAGATAAA 
CCGGTACTTG CTTCCGACGG TAACCAAAAG GTGGGCGTGA AGAAGGCACT 
AGTCTTCTAC AGTGGTAAAC CACCAAAAGG CGTTAAAAGT GATTGGATCA 
TGCATGAGTA TCGTCTCATC GAAAACAAAC CAAACAATCG ACCTCCTGGC 
TGTGATTTCG GCAACAAAAA AAACTCACTC AGACTTGATG ATTGGGTGTT 
ATGTAGAATC TACAAGAAGA ACAACGCAAG TCGACATGTT GATAACGATA 
AGGATCATGA TATGATCGAT TACATTTTCA GGAAGATTCC TCCGTCTTTA 
TCAATGGCGG CTGCTTCTAC AGGACTTCAC CAACATCATC ATAATGTCTC 
AAGATCAATG AATTTCTTCC CTGGCAAATT CTCCGGTGGT GGTTACGGGA 
TTTTCTCTGA CGGTGGTAAC ACGAGTATAT ACGACGGCGG TGGCATGATC 
AACAATATTG GTACTGACTC AGTAGATCAC GACAATAACG CTGACGTCGT 
TGGTTTAAAT CATGCTTCGT CGTCAGGTCC TATGATGATG GCGAATTTGA 
AACGAACTCT CCCGGTGCCG TATTGGCCTG TAGCAGATGA GGAGCAAGAT 
GCATCTCCGA GCAAACGGTT TCACGGTGTA GGAGGAGGAG GAGGAGATTG 
TTCGAACATG TCTTCCTCCA TGATGGAAGA GACTCCACCA TTGATGCAAC 
AACAAGGTGG TGTGTTAGGA GATGGATTAT TCAGAACGAC ATCGTACCAA 
TTACCCGGTT TAAATTGGTA CTCTTCTTAA TCAAATGTGT TTCGCCGCCG 
GTGTGAAGAA TTTTCCGGTG ACAGTGAAGA TTTTTTTCCG ATTGGTGGGG 
TCATTTGCAT GCATTATATA ATTTGAGATT TGTGTATATG TTTTGGGTTA 
ATTAATTGGT CACAGGGGTT AGAGGAAGAA GATTATTTAG AGAGCGGAGA 
AGAAGTGAGG CAACATATAG AAAACATAGG TTTAAAAAAT ATTACTGTTT 
GTTAAGTTTA ATGATTAAAT GTATAAATCT TATACTTAGA TGTTTATATA 
TAGTTTGTAT AGATGCATAT AGTTTCTCTC AATGCTATTT TGAGATTGTA 
TTTTCTTGTA AAGGAAATGT TTTTTTAAAA AAAAAAAAAA AAGTTGTGTA 
ACTATGTATT TTTCTTCACA TATGTTGAAA ATCACTGATG TTTTTGGACT 
GAAAAAAAAA AAAAAAAAA

Gene models with high sequence identity

  1. AT3G15510.1 [+] show detail - NAC domain containing protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily No apical meristem (NAM) protein 3.3e-69
HMMPfam No apical meristem (NAM) protein 3.2e-52
ProfileScan No apical meristem (NAM) protein 62.123

See the detailed result >

AT3G15510.1

Model type
Protein coding
Short Description
NAC domain containing protein 2
Curator Summary
Note of caution: not to be confused with another protein (AtNAC6 locus AT5G39610) which on occasion has also been referred to as AtNAC2.
Computational Description
NAC domain containing protein 2 (NAC2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: multicellular organismal development, regulation of transcription; LOCATED IN: cellular_component unknown; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC (No Apical Meristem) domain transcriptional regulator superfamily protein (TAIR:AT1G52880.1); Has 3051 Blast hits to 3043 proteins in 76 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 3049; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-22-L08 introduced

  • F19541 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found