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RAFL15-26-A21

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda12944)

full reading [+] show sequence

Nucleotide sequence: RAFL15-26-A21 - full reading 
ATTTCTCTTT AGTCTCTCTA CGGAACCTGT CTTCTTGTCT TGTCCAAAAT 
CGGATTTTTA AGAGTACAAG TGAGTTTATT TTGGGGGCCG AAATCTGTCC 
TGGAGGATAC AGAAGCAAGA TGAAGTTAAT AGATCGAAGA ATGAGGTTAA 
CGGAGCTGCT CTTACGGTGC TCCATCAGTG TCTTCGCTCT CCTCGCGCTT 
ATTCTAGTTG TGACAGACAC TGAGGTCAAG CTTATCTTCA CTATCAAGAA 
GACGGCCAAG TACACGGACA TGAAGGCGGT TGTGTTCTTG GTGGTGGCTA 
ATGGGATAGC TGCGGTTTAT TCTTTGTTGC AATCAGTTCG TTGCGTGGTG 
GGTACGATGA AAGGAAAGGT TTTGTTTAGT AAGCCTCTTG CTTGGGCCTT 
TTTCTCTGGT GATCAGGCGA TGGCGTACTT GAATGTGGCA GCCATTGCAG 
CAACAGCAGA GTCTGGTGTG ATTGCTAGGG AAGGAGAGGA AGATTTGCAA 
TGGATGAGAG TGTGTACTAT GTATGGAAAG TTCTGCAACC AAATGGCTAT 
AGGAGTCTCT AGCGCCTTGT TAGCCTCCAT TGCTATGGTT TTCGTCTCCT 
GCATTTCTGC CTTTAGTCTC TTCCGCTTGT ACGGTGCCAC CAAAGACCGC 
AGAACCACGC CGTGGTGAAG TGAATGCGGC TTTGTCTTTA GTAGTGTTGA 
AAATGTTGTT GTTAAAAAAA CATATAGTAA CAAAAGTGTA GGCTCTTGTT 
GGTTCTTCTT CTTCTTCTTC TTGATGATGT TATATGTGAC AAACAATATG 
TAAAACTAGA CTATTGATGT TCTGTGCCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT4G16442.1 [+] show detail - Uncharacterised protein family (UPF0497)
    E-value: 0; Score: 99.88

 

InterPro Scan Digest

Program Description E-value
HMMTigr Uncharacterised protein family UPF0497, trans-membrane plant subgroup 6.1e-38
HMMPanther UNCHARACTERIZED 5.5e-53
HMMPanther NITRATE, FROMATE, IRON DEHYDROGENASE 5.5e-53
Coil coiled-coil 0
HMMPfam Uncharacterised protein family UPF0497, trans-membrane plant 1e-43

See the detailed result >

AT4G16442.1

Model type
Protein coding
Short Description
Uncharacterised protein family (UPF0497)
Computational Description
Uncharacterised protein family (UPF0497); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0497, trans-membrane plant (InterPro:IPR006702), Uncharacterised protein family UPF0497, trans-membrane plant subgroup (InterPro:IPR006459); BEST Arabidopsis thaliana protein match is: Uncharacterised protein family (UPF0497) (TAIR:AT2G35760.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-26-A21 introduced

  • F09743 - Specific phenotypes were NOT observed.
  • F15044 - seed::increased length

Mutant lines with disrupted or induced

3 mutant lines found