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RAFL15-29-N04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19220)

full reading [+] show sequence

Nucleotide sequence: RAFL15-29-N04 - full reading 
ACGTTTGTTT TCACATTTAA ACGACACTTA AGTGCCCACT GGCCACTTCC 
ATTGACACCC ATTATTACTC TGTCTGTGTC CTCTCTTTTA AAACCTAATC 
CTCTGTGAAA CTTTTCCAGT TAAAATCTTT TGCAATGTCT AAAGCAGTTC 
TATTGGTCGC TCTCTGCTTT TTACCGGCTC TAGCCATCGC GGCTAGACCG 
AACAAGAACC CTTTCGTCGT GCGAGGCCGT GTCTATTGCG ACACTTGCCT 
CGCTGGTTTC GAAACTCCAG CCTCTACTTA CATCTCCGGT GCAGTGGTTA 
GATTGGAATG TAAAGACAGG AGAACAATGG AGTTAACGTA TAGCCACGAG 
GCGAGAACTG ACTCGACAGG ATCATACAAG ATCTTGGTTA ACGAGGATCA 
TGATGAGCAG TTCTGTGATG CAATGTTGGT TCGTAGCTCT CAGTTACGGT 
GTTCCAATGT GTCCCCTGGT CATGACCGTG CCCGTGTGAC TCTCACTCGC 
TTCAACGGTA TTGCTTCTGA CGACCGTTTT GCTAACAACA TGGGATTTCT 
AAGGGATGCA GCTATGCCGG GTTGTGCGGA TATCATGAAG CTATACCAAG 
AAACCGAGGA CTAGTTTCTC TGTTTTGTTA AGTATGTGGT ATTAAAATGT 
ATTGCAGCTT GTGTTATGTG CATTTTATCT GTGACGGTTT TATTACTAAT 
CGAAAAAAAT ACATATCGAA AAAAAAAA

Gene models with high sequence identity

  1. AT4G08685.1 [+] show detail - Pollen Ole e 1 allergen and extensin family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G08685.1

Model type
Protein coding
Short Description
Pollen Ole e 1 allergen and extensin family protein
Curator Summary
Encodes a protein, expressed in leaves, with similarity to pollen allergens.
Computational Description
SAH7; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: Pollen Ole e 1 allergen and extensin family protein (TAIR:AT1G78040.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-29-N04 introduced

  • F04722 - seed::increased size / seed::increased length
  • F07447 - Specific phenotypes were NOT observed.
  • F15414 - Specific phenotypes were NOT observed.
  • F17211 - Specific phenotypes were NOT observed.
  • F19703 - Specific phenotypes were NOT observed.
  • F25439 - seed::increased width
  • F25924 - Specific phenotypes were NOT observed.
  • F26435 - Specific phenotypes were NOT observed.
  • F27216 - seed::increased size / seed::increased length
  • F29344 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

10 mutant lines found