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  3. RAFL15-43-B06

RAFL15-43-B06

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19248)

full reading [+] show sequence

Nucleotide sequence: RAFL15-43-B06 - full reading 
GTGTAGTCGG CGGCTGACGT TTTCTTTACC CTAACACTTT TGAAGCAACA 
TAACAAACGC GCCGCGAATC CATTTTTAAG GGTTTAGAGA CTTTTAGGGT 
TTACTTGAGA ACAGAGAGAT GGGGAAGAGC GAAAAGACGT CGTTGGGGCG 
ATCACTCGTG AAGCACCACA ACCATATGAT ACAAGAATCC AAAGACAAAG 
GCAAGTACTA CAAGAATCTA CAGAAGAAAG TTCTCGAATC TGTGACTGAG 
GTCAGTGACA TCGACGCCAT CATTGAGCAA GCTGAGGAGG CAGAGCGTCT 
TTACACCATT AATCACAGCT CCTCCACACC TTTGTCTATC AATCTAGACA 
CAAATTCTAG CTCAAGTGTT ATAGCAGCTG AAGAATGGAG AGAGCAACAG 
AAGATAGAGG AGGCTTTACA CGCCAGTAGT CTTCAAGTAC CTCGAAGACC 
TCCGTGGACA CCTGAAATGT CAGTGGAAGA ACTTGATGCT AATGAAAAAC 
AAGCTTTTCT AAATTGGCGC CGGATGCTTG TGAGCCTTGA GGAAAATGAA 
AAGCTAGTGT TGACTCCATT CGAAAAGAAC CTTGACATCT GGAGACAGCT 
TTGGAGAGTG CTTGAACGCA GTGATTTGAT TGTTATGGTA GTTGATGCTA 
GAGATCCACT GTTTTACCGC TGCCCTGATC TTGAGGCATA TGCTCAAGAA 
ATTGATGAGC ATAAAAAAAT AATGCTTCTA GTGAACAAGG CGGATCTTTT 
ACCTACTGAT GTCAGGGAGA AATGGGCAGA ATATTTCCGC CTTAACAACA 
TTCTGTTTGT TTTCTGGTCA ACCATAGCTG CTACAGCTAC CCTAGAAGGT 
AAAGTCTTGA AAGAGCAATG GAGACAACCC GATAACTTGC AGAAGACAGA 
TGATCCAGAC ATTATGATAT ATGGCAGAGA CGAGCTGTTG AGTCGTTTGC 
AATTTGAGGC TCAAGAGATT GTCAAAGTAA GGAATTCTAG AGCAGCATCC 
GTATCATCAC AGTCATGGAC TGGTGAATAT CAACGTGATC AAGCCGTGGT 
TGGATTTGTT GGGTACCCAA ATGTTGGAAA GAGTTCTACA ATCAATGCAT 
TGGTGGGTCA GAAGCGAACA GGTGTCACCT CTACCCCAGG AAAAACAAAG 
CATTTCCAGA CTTTGATCAT CTCTGATGAG CTTATGCTAT GCGATTGCCC 
TGGTTTAGTC TTCCCTTCGT TCTCAAGCTC AAGCTATTCA GGTGGTGGCT 
GACAAGGTCC CTCGCCGTGT AATTGAGAGT GTGTACAACA TTTCTCTTCC 
TAAACCCAAA ACCTATGAGC GTCAGTCCCG CCCGCCTCAT GCTGCAGAGC 
TCTTAAAAAG TTACTGTGCT TCTCGTGGCT ATGTTGCCTC GAGTGGACTA 
CCGGATGAAA CGAAAGCTGC AAGGCTGATT CTGAAAGATT ACATTGGAGG 
TAAGCTGCCA CATTATGCAA TGCCACCTGG AATGCCCCAA GCTGATGAAC 
CGGACATAGA AGACACTCAA GAACTGGAGG ATATTCTCGA AGGTTCAGAG 
TCCGATGACT CTGCAGTAGG AGATGAGACA GAAAACGAGC AAGTTCCTGG 
TATTGATGAT GTGCTAGATG ATCTGAGCTC GTTTGATCTT GCCAATGGGC 
TTAAGTCTTC AAAGAAAGTG ACAGCAAAGA AGCAAACCGC GTCACATAAA 
CAGCACAAAA AGCCACAGAG GAAAAAGGAT CGGACTTGGA GGGTTCAAAA 
CACAGAAGAT GGAGATGGAA TGCCTTCTGT TAAAGTTTTC CAGAAACCAG 
CTAACACAGG TCCTCTTACG ATGCGGTGAT TATCAAATTG TAGTCCATCC 
AAGCAAAGAT GGCAACCGAA GCTACTTAAA GTTTTTTTTT TTTTTCAAAA 
AATGTAACAG CAGTTGAACC TGTCGCAGTA GTTCTCGAGT GTCTTGATGT 
TTTTGTTTTT ATGATTAAAG TCTTATTTTG GGGAAAAGTA GAAAAAAGTG 
ACAACTCAAA TCTGGTGGAA AATGGAGAAT TGTTTTTGCC AGTTGGAGAT 
ACCTATCGCT TTGTTTTGAG AATATAATAG CCATAAATAG AGTTTTCATG 
TAAAAAA

Gene models with high sequence identity

  1. AT1G08410.1 [+] show detail - P-loop containing nucleoside triphosphate hydrolases superfamily protein
    E-value: 0; Score: 99.89

 

InterPro Scan Digest

Program Description E-value
Gene3D no description 4.3e-39
FPrintScan GTP1/OBG 9.4e-07
FPrintScan GTP1/OBG 9.4e-07
superfamily P-loop containing nucleoside triphosphate hyd 2.1e-36
HMMPfam GTP-binding protein, HSR1-related 1.9e-09
HMMPanther GTP-BINDING PROTEIN-RELATED 1.6e-80
HMMPanther GTP-BINDING PROTEIN-RELATED 1.6e-80
HMMPanther GTP-BINDING PROTEIN-RELATED 2.9e-28
HMMPanther GTP-BINDING PROTEIN-RELATED 2.9e-28

See the detailed result >

AT1G08410.1

Model type
Protein coding
Short Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Computational Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: GTP binding; INVOLVED IN: biological_process unknown; LOCATED IN: intracellular; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: GTP1/OBG (InterPro:IPR006073), GTP-binding protein, HSR1-related (InterPro:IPR002917); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT2G27200.1); Has 7267 Blast hits to 7158 proteins in 1932 species: Archae - 109; Bacteria - 4700; Metazoa - 622; Fungi - 502; Plants - 285; Viruses - 0; Other Eukaryotes - 1049 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-43-B06 introduced

  • F22502 - Specific phenotypes were NOT observed.
  • F28843 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

8 mutant lines found