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  3. RAFL15-47-M19

RAFL15-47-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13324)

full reading [+] show sequence

Nucleotide sequence: RAFL15-47-M19 - full reading 
AGACCCTCAA GGTATCTTCC AGAAGCAACG AGAAGACCTG CAAGAGAAAA 
TTTTCAGATT CAACTATGGC GGACGAAGCA AAAGCTAAAG GAAACGCAGC 
TTTCTCCTCC GGTGACTTCA ATTCCGCCGT TAATCACTTC ACCGACGCAA 
TCAACCTAAC ACCAACCAAT CACGTTCTCT TCTCAAACCG TTCCGCTGCT 
CACGCATCGC TTAATCACTA CGACGAAGCT CTCTCAGACG CGAAGAAGAC 
TGTTGAACTT AAACCAGATT GGGGAAAAGG TTATAGCCGT CTCGGTGCTG 
CTCACTTAGG TCTAAATCAG TTCGATGAAG CCGTGGAGGC GTATTCGAAA 
GGGCTTGAGA TTGATCCAAG TAACGAAGGT TTGAAATCAG GTTTAGCTGA 
TGCGAAAGCT TCTGCGTCTA GGTCACGCGC TTCCGCGCCC AATCCGTTTG 
GTGATGCTTT TCAGGGACCG GAGATGTGGT CGAAATTGAC GGCGGATCCT 
TCTACTAGAG GGTTATTGAA ACAGCCTGAT TTTGTTAATA TGATGAAGGA 
GATTCAGAGG AACCCTAGTA ATCTTAATCT TTATTTGCAA GATCAGAGAG 
TTATGCAAGC TCTTGGAGTT TTGTTGAATA TTCAAATCAG GACTCAACAG 
GCTGGTGATG ATATGGAGAT TGGTGAGGAA GAGATGGCTG TGCCTTCTAG 
GAAGGAGCCT GAGGTAGAGA AGAAACGAAA ACCTGAGCCT GAGCCTGAGC 
CTGAGCCGGA GTTTGGAGAA GAGAAGCAGA AGAAGCTTAA AGCTCAGAAG 
GAGAAAGAGT TGGGGAATGC TGCGTATAAG AAGAAGGACT TCGAAACTGC 
AATCCAGCAT TACTCTACAG CTATGGAGAT TGATGATGAA GATATCTCTT 
ATATCACTAA TCGTGCTGCT GTTCATCTAG AGATGGGAAA GTATGATGAG 
TGTATCAAGG ATTGTGATAA GGCTGTTGAA AGGGGTAGAG AGCTTAGGTC 
TGATTACAAG ATGGTGGCTA AAGCTTTGAC TAGGAAAGGA ACTGCTTTAG 
GGAAGATGGC TAAAGTCTCG AAAGACTATG AACCTGTGAT TCAGACTTAC 
CAGAAAGCTA TTACGGAGCA TCGTAACCCT GAAACATTGA AGAGACTGAA 
TGAGGCAGAG AGAGCAAAGA AAGAGTTGGA GCAGCAAGAG TACTATGATC 
CTAATATCGG TGATGAGGAG CGTGAGAAAG GTAATGACTT TTTTAAGGAG 
CAAAAGTATC CTGATGCTGT GAGACATTAC ACTGAAGCGA TCAAGAGGAA 
TCCAAAAGAC CCGAGAGCAT ATAGCAACCG GGCTGCATGT TACACTAAAC 
TGGGGGCAAT GCCCGAAGGA TTAAAAGATG CAGAGAAATG TATCGAGCTC 
GATCCAACAT TCTTAAAGGG ATACAGTAGA AAAGGTGCAG TCCAGTTCTT 
CATGAAGGAG TATGACAATG CAATGGAAAC GTACCAGAAG GGTCTCGAAC 
ATGATCCTAA TAACCAGGAA CTTCTTGATG GTGTTAAAAG ATGTGTACAA 
CAGATAAACA AGGCAAACCG TGGCGACCTT ACTCCTGAGG AATTGAAAGA 
AAGACAGGCT AAGGGAATGC AAGACCCAGA AATTCAGAAC ATTCTCACAG 
ATCCTGTAAT GAGACAGGTA CTGTCTGATC TCCAGGAGAA TCCAGCAGCA 
GCACAAAAGC ACATGCAGAA CCCAATGATC ATGAACAAAA TCCAAAAGCT 
TATCAGCTCA GGAATCGTCC AGATGAAATA AACGAAGCCA AGACATTGAT 
TTCGATTTTG CTGAGTCATT ACTCTTTTAT AACTCCAAAC ACTAAGATCG 
AATTCTTCTC ATTTTTCAGA CTTTTCTGAT ATATCAATTT TTCTTTCTTT 
CTCATACCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMSmart Tetratricopeptide repeat 0.47
HMMSmart Tetratricopeptide repeat 12
HMMSmart Tetratricopeptide repeat 1.9e-07
HMMSmart Heat shock chaperonin-binding 1.7e-09
HMMSmart Tetratricopeptide repeat 0.0016
HMMSmart Tetratricopeptide repeat 0.0035
HMMSmart Tetratricopeptide repeat 82
HMMSmart Tetratricopeptide repeat 0.26
HMMSmart Tetratricopeptide repeat 0.00012
HMMSmart Tetratricopeptide repeat 2.1e-05
HMMSmart Heat shock chaperonin-binding 9.9e-12
ProfileScan Tetratricopeptide repeat 9.647
ProfileScan Tetratricopeptide repeat 7.552
ProfileScan Tetratricopeptide repeat 12.685
ProfileScan Tetratricopeptide repeat 9.647
ProfileScan Tetratricopeptide repeat 5.576
ProfileScan Tetratricopeptide repeat 5.841
ProfileScan Tetratricopeptide repeat 8.703
ProfileScan Tetratricopeptide repeat 8.437
ProfileScan Tetratricopeptide repeat 10.768
ProfileScan Tetratricopeptide repeat-containing 25.733
ProfileScan Tetratricopeptide repeat-containing 31.223
Gene3D Tetratricopeptide-like helical 3.3e-33
Gene3D Tetratricopeptide-like helical 1.8e-46
HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 0
HMMPanther TPR REPEAT CONTAINING PROTEIN 0
superfamily TPR-like 9.4e-46
superfamily TPR-like 2.2e-28
Coil coiled-coil 0
HMMPfam Tetratricopeptide TPR-1 8.8e-09
HMMPfam Tetratricopeptide TPR-1 6e-05
HMMPfam Tetratricopeptide TPR-1 2e-05
HMMPfam Tetratricopeptide TPR-1 8.5e-05
HMMPfam Tetratricopeptide TPR-1 8.9e-07
HMMPfam Tetratricopeptide TPR-1 3.5e-07

See the detailed result >

AT1G62740.1

Model type
Protein coding
Short Description
stress-inducible protein, putative
Computational Description
stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-47-M19 introduced

  • F10632 - Specific phenotypes were NOT observed.
  • F15507 - Specific phenotypes were NOT observed.
  • F27209 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

8 mutant lines found