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  3. RAFL15-47-M19

RAFL15-47-M19

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda13324)

full reading [+] show sequence

Nucleotide sequence: RAFL15-47-M19 - full reading
AGACCCTCAA GGTATCTTCC AGAAGCAACG AGAAGACCTG CAAGAGAAAA 
TTTTCAGATT CAACTATGGC GGACGAAGCA AAAGCTAAAG GAAACGCAGC
TTTCTCCTCC GGTGACTTCA ATTCCGCCGT TAATCACTTC ACCGACGCAA
TCAACCTAAC ACCAACCAAT CACGTTCTCT TCTCAAACCG TTCCGCTGCT
CACGCATCGC TTAATCACTA CGACGAAGCT CTCTCAGACG CGAAGAAGAC
TGTTGAACTT AAACCAGATT GGGGAAAAGG TTATAGCCGT CTCGGTGCTG
CTCACTTAGG TCTAAATCAG TTCGATGAAG CCGTGGAGGC GTATTCGAAA
GGGCTTGAGA TTGATCCAAG TAACGAAGGT TTGAAATCAG GTTTAGCTGA
TGCGAAAGCT TCTGCGTCTA GGTCACGCGC TTCCGCGCCC AATCCGTTTG
GTGATGCTTT TCAGGGACCG GAGATGTGGT CGAAATTGAC GGCGGATCCT
TCTACTAGAG GGTTATTGAA ACAGCCTGAT TTTGTTAATA TGATGAAGGA
GATTCAGAGG AACCCTAGTA ATCTTAATCT TTATTTGCAA GATCAGAGAG
TTATGCAAGC TCTTGGAGTT TTGTTGAATA TTCAAATCAG GACTCAACAG
GCTGGTGATG ATATGGAGAT TGGTGAGGAA GAGATGGCTG TGCCTTCTAG
GAAGGAGCCT GAGGTAGAGA AGAAACGAAA ACCTGAGCCT GAGCCTGAGC
CTGAGCCGGA GTTTGGAGAA GAGAAGCAGA AGAAGCTTAA AGCTCAGAAG
GAGAAAGAGT TGGGGAATGC TGCGTATAAG AAGAAGGACT TCGAAACTGC
AATCCAGCAT TACTCTACAG CTATGGAGAT TGATGATGAA GATATCTCTT
ATATCACTAA TCGTGCTGCT GTTCATCTAG AGATGGGAAA GTATGATGAG
TGTATCAAGG ATTGTGATAA GGCTGTTGAA AGGGGTAGAG AGCTTAGGTC
TGATTACAAG ATGGTGGCTA AAGCTTTGAC TAGGAAAGGA ACTGCTTTAG
GGAAGATGGC TAAAGTCTCG AAAGACTATG AACCTGTGAT TCAGACTTAC
CAGAAAGCTA TTACGGAGCA TCGTAACCCT GAAACATTGA AGAGACTGAA
TGAGGCAGAG AGAGCAAAGA AAGAGTTGGA GCAGCAAGAG TACTATGATC
CTAATATCGG TGATGAGGAG CGTGAGAAAG GTAATGACTT TTTTAAGGAG
CAAAAGTATC CTGATGCTGT GAGACATTAC ACTGAAGCGA TCAAGAGGAA
TCCAAAAGAC CCGAGAGCAT ATAGCAACCG GGCTGCATGT TACACTAAAC
TGGGGGCAAT GCCCGAAGGA TTAAAAGATG CAGAGAAATG TATCGAGCTC
GATCCAACAT TCTTAAAGGG ATACAGTAGA AAAGGTGCAG TCCAGTTCTT
CATGAAGGAG TATGACAATG CAATGGAAAC GTACCAGAAG GGTCTCGAAC
ATGATCCTAA TAACCAGGAA CTTCTTGATG GTGTTAAAAG ATGTGTACAA
CAGATAAACA AGGCAAACCG TGGCGACCTT ACTCCTGAGG AATTGAAAGA
AAGACAGGCT AAGGGAATGC AAGACCCAGA AATTCAGAAC ATTCTCACAG
ATCCTGTAAT GAGACAGGTA CTGTCTGATC TCCAGGAGAA TCCAGCAGCA
GCACAAAAGC ACATGCAGAA CCCAATGATC ATGAACAAAA TCCAAAAGCT
TATCAGCTCA GGAATCGTCC AGATGAAATA AACGAAGCCA AGACATTGAT
TTCGATTTTG CTGAGTCATT ACTCTTTTAT AACTCCAAAC ACTAAGATCG
AATTCTTCTC ATTTTTCAGA CTTTTCTGAT ATATCAATTT TTCTTTCTTT
CTCATACCAA AAAAAAAAAA AAAA

Gene models with high sequence identity

  1. AT1G62740.1 [+] show detail - stress-inducible protein, putative
    E-value: 0; Score: 99.95

 

InterPro Scan Digest

Program Description E-value
HMMSmart Tetratricopeptide repeat 0.47
HMMSmart Tetratricopeptide repeat 12
HMMSmart Tetratricopeptide repeat 0.00000019
HMMSmart Heat shock chaperonin-binding 0.0000000017
HMMSmart Tetratricopeptide repeat 0.0016
HMMSmart Tetratricopeptide repeat 0.0035
HMMSmart Tetratricopeptide repeat 82
HMMSmart Tetratricopeptide repeat 0.26
HMMSmart Tetratricopeptide repeat 0.00012
HMMSmart Tetratricopeptide repeat 0.000021
HMMSmart Heat shock chaperonin-binding 0.0000000000099
ProfileScan Tetratricopeptide repeat 9.647
ProfileScan Tetratricopeptide repeat 7.552
ProfileScan Tetratricopeptide repeat 12.685
ProfileScan Tetratricopeptide repeat 9.647
ProfileScan Tetratricopeptide repeat 5.576
ProfileScan Tetratricopeptide repeat 5.841
ProfileScan Tetratricopeptide repeat 8.703
ProfileScan Tetratricopeptide repeat 8.437
ProfileScan Tetratricopeptide repeat 10.768
ProfileScan Tetratricopeptide repeat-containing 25.733
ProfileScan Tetratricopeptide repeat-containing 31.223
Gene3D Tetratricopeptide-like helical 3.3e-33
Gene3D Tetratricopeptide-like helical 1.8e-46
HMMPanther STRESS-INDUCED-PHOSPHOPROTEIN 1 (STI1) (HSC70 0
HMMPanther TPR REPEAT CONTAINING PROTEIN 0
superfamily TPR-like 9.4e-46
superfamily TPR-like 2.2e-28
Coil coiled-coil 0
HMMPfam Tetratricopeptide TPR-1 0.0000000088
HMMPfam Tetratricopeptide TPR-1 0.00006
HMMPfam Tetratricopeptide TPR-1 0.00002
HMMPfam Tetratricopeptide TPR-1 0.000085
HMMPfam Tetratricopeptide TPR-1 0.00000089
HMMPfam Tetratricopeptide TPR-1 0.00000035

See the detailed result >

AT1G62740.1

Model type
Protein coding
Short Description
stress-inducible protein, putative
Computational Description
stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to cadmium ion, response to stress; LOCATED IN: cytosol, nucleus, plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G12270.1); Has 44605 Blast hits to 18649 proteins in 1479 species: Archae - 1696; Bacteria - 14533; Metazoa - 9820; Fungi - 2891; Plants - 3854; Viruses - 4; Other Eukaryotes - 11807 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL15-47-M19 introduced

  • F10632 - Specific phenotypes were NOT observed.
  • F15507 - Specific phenotypes were NOT observed.
  • F27209 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

8 mutant lines found