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  3. RAFL16-10-G04

RAFL16-10-G04

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19393)

full reading [+] show sequence

Nucleotide sequence: RAFL16-10-G04 - full reading 
TTCTTCTCTC GATCTCGGAT TTTTCTGATC GATGGCGGTT CCCACACTCT 
GTATCGCCGA TGGAATCTAC CCCACTGCTT TTTTCTACCG GAATTCAGTC 
CGACGACTGA CCTCCGTCGC GCATGATCGG TTTACGAACC CGAAATTCGG 
AATCGATGGA CGTCTACGGA ACGGACCGAA GGTGACGGCA ACGGTGAATC 
CATATACGTA CACGGAGGCG GCGCAGCCCG AAGAGCGGAA GAGTTTGACG 
GATTTTTTGG TGGAAGCTAG AGATTTCGTT AGATCTGACG GCGGAGATGG 
TGGTCCACCT CGGTGGTTCT CTCCCTTGGA ATGTGGCGCA CGCGCTCCAG 
AATCTCCTCT TCTTCTCTAC TTACCTGGGA TCGATGGTAC TGGATTAGGG 
CTCATTCGCC AGCATAAGAG GCTTGGAGAG ATATTTGACA TATGGTGCCT 
TCACTTTCCA GTCACTGATC GTACCCCTGC TCGAGATCTT GTGAAGCTCA 
TTGAGAGAAC AGTTAGGTCA GAGTACTTCC GTTTACCAAA GAGACCCATA 
TACATAGTTG GAGAATCTAT TGGAGCTTGT CTTGCTCTAG ATGTTGCAGC 
CAGTAACCCT GACATTGATC TTGTCTTGAT TCTAGCTAAT CCAGTCACAC 
GTGTCAACAA CTTCATGTTG CAACCTTTAT CGAGTCTATT GGAAATTTTG 
CCAGACGGAG TTCCCAGCTT CCTGGAGGAG AATTTTCGGT TTGAACAAGG 
TTATCCGTTT GCAGCAATGT TCGAGACTAT GCTGAATGAA ACTGATGCCG 
CACAGATCGG TGGAGGGCTA TTAGGAGACC TCTTTGCAAC TTCAGTTAAC 
CTGCCGACTC TGGCTAGGAT CTTTCCAAAG GACACACTTC TATGGAAGCT 
TCAACTGCTT AAGTCTGCTT CAGCATCTGC TAAGTCTCAC ATGTACACAG 
TCAAAGCCCA AACACTTATA CTTTTGAGTG GACGCGATCA GTGGTTACTA 
AACAAGGAAG ACATTGAGAA ACTCCATTGT ACATTGCCGA ATTGTGAAGT 
CCGTAAGTTC GAGAATTACG GACAGCTTCT CTTTTTGGAG GATGGGGTAG 
ATCTGGTGAC TATCATCAAG TGTACTTATT ATTATCGCCG TGGAAAATTG 
CTTGATTACG TTTCTGATTT CATTCTGCCT ACCCCATTTG AGCTCAAAGA 
GTATGAAGAA TCACAAAGAT TGCTAACTGC TATAACCTCC CCAGTCTTTC 
TCTCAACTCT AGATAACGGT ACAGTAGTAA GATCACTTGC GGGAATACCT 
TCAGAGGGAC CGGTTCTCTA TGTTGGCAAT CACATGTTGC TTGGTACCGA 
ATTGCGTCCA GCAGCAATTC ATTTCCTGAA AGAAAAGAAC ATTCTGTTGC 
GAGGACTTGC ACATCCAGTG ATGTTTGCCA AAAAATATGG CTCAAAACTC 
CCTGATATGC ATATGTTCGA CTCAGTTAGG ATGATAGGCG CAGTTCCTGT 
CTCAAATATC AATTTCTATA AACTACTTCG CTCAAAGGCT CATGTGGTTT 
TGTATCCTGG AGGTGTCCGT GAAGCTTTGC ACAGAAAGGG TGAAGTATAC 
AAGTTGTTTT GGCCAGAACA TTCAGAGTTT GTAAGGACCG CATCTAAATT 
TGGAACAAAA ATCATTCCTT TTGGGGTTGT TGGTGAAGAT GATCTCTGTG 
AAGTGGTCTT CGATTACAAT GATCAAATGA AGATCCCTTT CCTGAAGAAT 
CTTATAAAAG AGTTATCACA AGACTCTACT TACTTGAGGA ACGGTGAAGA 
AGGAGAAGTA GGAAACCAAG ATTTGCATAT GCCTGGAATA GTTCCCAAGA 
TGCCGGGACG GTTTTACGTA TACTTTGGGA AACCAATTTA CACAGAAGGT 
AGAGAGGACG AGCTAAATGA TAAAGAGAAA GCTCATGAGG TTTACTTGCA 
GGTCAAGTCT GAGGTAGAAA GATGTATGAC CTATTTGAAG ATCAAAAGAG 
AAGGTGATCC TTATAGAAAC ATTTTAGCGA GGTCCCTCTA TCACTTCTCA 
CATGGTTTCT CTTCCCAAGT CCCAACCTTT GACCTCCGAA ATCAATAATT 
TTAGTTACTG GATTTGTGAC TTAATTAACT TTGTGGAATT TGGATATGTT 
ATTGTAACTT CTAAAAGTAC AAGGCTGTTG ATGTAGAAAT TGAGTAAGTT 
CGGGGTGTTA TGTTAAAAAT TCATGCAAAA AA

Gene models with high sequence identity

  1. AT5G41130.1 [+] show detail - Esterase/lipase/thioesterase family protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam Diacylglycerol acyltransferase 2e-07
Gene3D no description 2.3e-07
HMMPanther ALPHA/BETA HYDROLASE 0.00011
HMMPanther ALPHA/BETA HYDROLASE RELATED 0.00011
superfamily alpha/beta-Hydrolases 3.6e-17

See the detailed result >

AT5G41130.1

Model type
Protein coding
Short Description
Esterase/lipase/thioesterase family protein
Computational Description
Esterase/lipase/thioesterase family protein; FUNCTIONS IN: transferase activity, transferring acyl groups other than amino-acyl groups, catalytic activity, acyltransferase activity; INVOLVED IN: metabolic process; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Diacylglycerol acyltransferase (InterPro:IPR007130), Phospholipid/glycerol acyltransferase (InterPro:IPR002123); BEST Arabidopsis thaliana protein match is: Esterase/lipase/thioesterase family protein (TAIR:AT5G41120.1); Has 500 Blast hits to 489 proteins in 151 species: Archae - 0; Bacteria - 285; Metazoa - 8; Fungi - 0; Plants - 158; Viruses - 0; Other Eukaryotes - 49 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-10-G04 introduced

  • F00124 - seed::decreased size / seed::decreased length
  • F07624 - Specific phenotypes were NOT observed.
  • F14303 - Specific phenotypes were NOT observed.
  • F19010 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

4 mutant lines found