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RAFL16-11-C23

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19402)

full reading [+] show sequence

Nucleotide sequence: RAFL16-11-C23 - full reading
AGTAACTTGT TTATTCAATA CCAGAGCTAC CTCAAATGCA ATTCAAACAA 
ATCTCTCTAT ATCTATTAAC TTTTTGAGTT ATTAGCATCC ATCAATCAAA
TACAAGAATT GAGATCATAG CTTAAGTACC TTCCATTGGA GATCTCATTT
TTGGGTTGGA AACCAAAAAA GGGACCTTGA CCAGCAGCTT CAAGCTTTTT
CTGTTTAAAG TACTCTTGAA GCTCTTTAGC CTTTTGTCTC TGAAACTCCA
CTGTAGTTAC ACTCTTCCCA TCAACAGCTA CAGCTTTCTG CGGCGGCGGA
GAAGGAGGAG GAGAGGAAGA TGGCTGTGAT GGAGGAACAG GTTTTTGAGG
CTCCCGGAGA GTAGGAGGAG CCGATGGTCT TCTTAAAGGA CCTTCTGTCT
GAGAGCATCT GATGATGAAG ACACATGGCT TAGTCGTTGT TGAGAATCTA
AAAGACGACG AAGCTGTCGA AGAAGAAGAT GAAGATGATG GATTTAGAAT
CCTGATACAT TGAATCGGTG AAGCTACTGA CATTTTTTTG TTAGTTGAAT
TGTCTGATTT TCGAAGCTTT GGTTCTGTCT TTTGGTAATG TCTTTGTGGA
TGTGATATGG CCAAGTCTCA TGGTTATGTG CAAATGGTAC TTTCGTAATC
ATCCCACGCG CGTTGAAAGC GCGTGTAATA GTTTTAACTG TTGTTTGACT
TGAAAGCTAA AACCAAGTAA TGATGATTGG GTAGATTTTT TTTTAAGAGC
TGAAACTTTG GTTAACCAAA CCGGAAAGAG CCGGTTTATT TGGTTGTCGG
TTAACCAAAG TATTTGTAAA GTGTTGTTGA AAAGAAATTC GGTTTGGTTC
TTGGGTAAAA AAAAAA

Gene models with high sequence identity

  1. AT1G34000.1 [+] show detail - one-helix protein 2
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT1G34000.1

Model type
Protein coding
Short Description
one-helix protein 2
Curator Summary
Encodes a novel member of the Lhc family from Arabidopsis with one predicted transmembrane alpha-helix closely related to helix I of Lhc protein from PSI (Lhca4). Gene expression is triggered by light stress and both transcript and protein accumulate in a light intensity-dependent manner. Ohp2 is associated with PSI under low- or high-light conditions.
Computational Description
one-helix protein 2 (OHP2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to light intensity; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 171 Blast hits to 159 proteins in 56 species: Archae - 0; Bacteria - 5; Metazoa - 24; Fungi - 6; Plants - 64; Viruses - 16; Other Eukaryotes - 56 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-11-C23 introduced

  • F23726 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

6 mutant lines found