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  3. RAFL16-14-I15

RAFL16-14-I15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19431)

full reading [+] show sequence

Nucleotide sequence: RAFL16-14-I15 - full reading 
GAAACAATTT GGATGCATAG AAAGGAAAAG AACAAAATCA AATCTAGCAA 
ATAAAATGGA TTCACAAGCG CAGTTGCAAC GTACTCATGG TCATCACCAA 
GCACAGGAGC CAATAAGGAT TCACCATCCA GAGGAAGAAG GGCATCATGA 
AAAAGGACCA TCAAAAGTTC TGAAGAAAGT GAAGGAAAAA GCAAAGAAGA 
TCAAGAATGT TCTTACTAAA CATGGACATG GTCATGAGCA CGATCGTGGA 
GAACACATCC CTGACGATCA CGATCTAGAC CAAGAAGACG ATGAAGATGA 
CTACAACGAC AACCAACTCC ACGGCGGTGC ACCAGCACGA GGAAAAGCTC 
ATATTCCGGT GAAGGAGGAG ATAGTCCCTC CAGGATCGAA AGCTTTTCCA 
GTTGTTTCCT CTTCACATAC AAAACCCTCT GAGCCAGTGA GAGGAGTTGG 
CCACGAAGCA ATGTCTCGTC CTATAAAACA CTCCGGTGTA CCGGAGAAAG 
AAGAGAGAAG AGGGGCTCCT ACACTGACGC CGCATAACAC TCCCGTGTCT 
TTACTATCTG CAACAGAAGA TGTGACAAGA ACATTTGTTC CTGATGAACA 
CAAGTCTCGA AACCAAAGTA AAGTTAATAT CGACAGACCC AAAGGATTGG 
ACCAAGATCC AGCTGCTCCG GGATCTCATG GTGGGTTGTC AAATTATCAG 
TCCAAAGTTA CTGACCCCAT CGGAAAATCT ACTGGAGAAA TTGGAGCAGC 
ATCGACTGTC TCAGCTATTG GAAGGTTAGG GTTGGGAACT GATCTGCAGA 
AGAAAAGCCA TGGCCTTGAT ACAAAACCGA CTGCTCAGGG ATCTCATGGT 
GGAATGTCGA GTTATCAGTC CAAAGTTACT GATCCCACCG GTAAAGGAGC 
TGGAGAACAA CCGAGTGTCG CAGCTTTTGG GAGGAGGAAC GAAACAGGTG 
AAGATGATCA CATGGGACTG GGAAGAGATC TCCGGGAGAA AAGTCATGGT 
TTTGATACTA AGTCAAGACC TGAAATGGGC AAGCACATAC CGGCGGGAGA 
CTATGGATCT AGATTGGGGA AAGAATCTCC GGAGCGGAGT GATGAATTTG 
ATCTGGGAAA AGATTTGCCG ACGAGAACTC AAGGTATACA AAACCCTCAG 
GGTTTTGATT CCAGAGGTCA GAGGAGAGGA GAGGAGATGC ACCAGCCTAA 
TCAGAGCAGC TACACCGATA AGATCTCATT AGCGACTTCG GTCGTAGCAG 
ACAAAGCTGT GGCGGCGAAA AACGCCGTCG CTTCGAAGTT AGGTTACTCC 
GGGGAAGGCG GCCACGAGAA TCGTGTGGAA GGAGCAGAAA ATCCTAGCTC 
CGCTGGTGGA TACGGAAGTA CGGTCGCAAG TATGGTGACT CCAGTTTACG 
AGAAGGTTAA AGAGACAGGA GCTAGTGTAA TGACGAAGTT ACCATTCACC 
GGGACCGGGA CAGAGCAAGG ACAAGACAGG GGCGTCTCGG CGAAAGAATT 
CCTTACGGAG AAACTGAGTC CGGGAGAGGA AGACAAGGCT TTGTCGGAAG 
TGGTCACTGA GAAGCTTCAT CTTGGAGGAG GCGGTGGCGA AACTGCGCCA 
CCGAAGAGAG GGATAGTGAC ACAATCGGAG GAGGTGGAGA AAAGGTTAGG 
AGGGTTTAAG GATCCGAGCT CGGAAGCAGC TACGAAACAG GGTGAAGCAT 
ATGCGGAGAA AGGCGAAGGA GGGATTGCGG AGAAGCTGAG AGGAGCTGTT 
ACTTCTTGGA TCGCTGGTAC GACGGAAGAA GTGACGCAAA AGTCTACAGA 
ATCTGTTCAA GACTCTACAC AGTCACTTGG CTCCACCATT GGGAATAAAA 
TGGGAATTAC GGGTTCGGGA GGAGGTGAGG CAGGCCAACA AGGTTCTATG 
CCTTTGCAAA AGAGATTTCA AGAATCTGGA AACTGAGATT CTGCTTCTTC 
TTTTTAAATG TATGGTTTGT TAATCCTTTC TAATGTGCGT TGTGGTTTGA 
TGATCCATGG CTTATTTTGA TGTATCTACT ACTAGTACCA TGTAAAAGTA 
TGAATAAATT GAGTTAAATA GGAAAAAAAA AA

Gene models with high sequence identity

  1. AT4G25580.1 [+] show detail - CAP160 protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

See the detailed result >

AT4G25580.1

Model type
Protein coding
Short Description
CAP160 protein
Computational Description
CAP160 protein; CONTAINS InterPro DOMAIN/s: CAP160 (InterPro:IPR012418); BEST Arabidopsis thaliana protein match is: CAP160 protein (TAIR:AT5G52300.1); Has 292 Blast hits to 249 proteins in 85 species: Archae - 0; Bacteria - 26; Metazoa - 66; Fungi - 33; Plants - 116; Viruses - 9; Other Eukaryotes - 42 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-14-I15 introduced

  • F02939 - Specific phenotypes were NOT observed.
  • F09737 - Specific phenotypes were NOT observed.
  • F11522 - Specific phenotypes were NOT observed.
  • F15913 - Specific phenotypes were NOT observed.
  • F23650 - Specific phenotypes were NOT observed.
  • F29113 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found