1. Home
  2. Full-length cDNAs
  3. RAFL16-21-I15

RAFL16-21-I15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19509)

full reading [+] show sequence

Nucleotide sequence: RAFL16-21-I15 - full reading 
AATTTCTTCT TCTCTCTCTC TTCTTCCTTC ACCAAAGCAG CTGCTTTTGC 
CAAACCCCTG TGACTTTGAG AGAGAGAGAG AGAGAGAAGA GAGATCATCA 
TCCATGGGAA TACCTTATTT TCTCCAAGTT TACCTTAATC AGAACTCATT 
TTCTTCTTCT TCTCCATCTC CGAAATCGAT CGTCGATTTT GTCTTCTCGC 
CGCTATTCTA AGCTTCTAAA GTTCACTTTT TTTTTCTCCT GAATCATTTG 
TTTGTTCTGT ACAAACCTTA GAGGAATCGG TATAAATCTA TTCTAAGCTG 
AAAATTTTGA GATGCCCATT TCGTCTTCGT CATGCTTAAG CTGATTACCG 
CAGTCAAAGT CGTATCTTGG TGTTTGGCGG CGCTCTCGAG CTTAGATCAG 
TGTTTCCATG GCTTAGTCTC TGATCTTTCT ACAGATCTTC ATAACTCTCC 
GCTCACTGGG TTCTTATCTG CTTTCTCTAA TCCTAACTTC TTCTTCGTCC 
GGATTATTTG ATTTCTTAAA AGCTGGAAAT TTACAGAGAC TTCGACGATT 
TAGCTGTGTT GTAGGAAGCT GGGAAAGATG TTGATCAGAG TTATGCATTA 
GAGTGATTTG CTTTAGGATT TCCACGGCAC AGGGGATTGA TTTTAGGGGT 
ATTGTTTGGT CATTAGATTA AAGGTTTTTA AGGGTTTCCA CTGTCATTGG 
TATATAGAGA TTGTTGCGTT GGGGTTGCTT TAGAACTTGA TTTAGGACAA 
AAGACTTTGA CTTTGAACTG GCAGTAGTTA GTGTTTTTAT CTGATGTAAA 
GGAGGGTTTG GAGCGTTTGA TGCTTGCCGA ATCAATTTTA TTTTGAAAAA 
TGTGTGAGAA TGATCATCAT TTTGTCGAGT GGAAGGAGCA TTTTGTCTCC 
CAAGAGCGAG GGAACCGTGT TGTTCATTAC TTCCTCAAGG ATTCTGCCGG 
TGAATCTATC CTAGCTGTCA TTGGTACTGA GAGAAGTGTT AGGCACATGT 
TCTATGTTGT CTCTGAGGAG TTTGTGCGCA TTCATGGTCC TGAGAATTCA 
ATTCATTCTG GCTTCAAATG GAGGTCGAGA AGGGAAGTTG TGGATTGGCT 
CACTTCAATG CTGTCTAAGC AGAGTACACA AGGAAACTGG TCGAAGTCAC 
CAAAATGTGA GTCAGGGGAA TCTAATGGAT CTCCCGAATT TCCAAGCAAT 
GGATTTACTG CTCAGCGAGC TCAAGCAAGT GAAGAGGTCC GTCTTCCCAT 
AAACTTGATT ATTCACAGTT GGGAGATTAT GTGGTCAGGA GCTCCTTGGA 
TGTGTGGTAA ACAGCTCAAA CATTACCCAT CATTTTGCAG AAATGGGACA 
ACAATAGGGG TTCAATCTTT TGTCTTTGTC TTGAGCAAAG GGGAGGATCG 
GTACGTTGCA TATCTGGAAG ATATGTATGA GGATAAGCGT GGCCTAAAAA 
AGGTCAAAGT GAGGTGGTTT CACTACACAA AAGAAGTGAA GGGTGCAGTT 
GCTCTCAAGA ACCCAAACCC AAAAGAGGTT TTTATCACCC CTCATTCACA 
GGTCATCAGT GCAGAATGTG TTGATGGTCC TGCCACTGTC TTGACCCGTG 
AGCATTATGA GGAGTGTGTG GCTTCCTTTC CGAATTCTTT ATTGGCAAGG 
GTACACATGT GCTATCGGCA ACTCAGGAAC AGCAAAGTTA AACCTTTTGA 
TTTGAGTAAA TTGCGTGGAT ATTTGGACCA ACCGATTATG TCTTGCTTAA 
GTTCTATGGA GGCTGGTCCT GTAGACTGTG CGATGAATAT AGAGGAAGAT 
GAAGAATGGA GTGAGGGTGA GAATGTAATG GTTGGTGCTG AGAGAAGCAT 
GAAAAAACGA GCAAGAATTA TGTCTGATCA TCTGTTAACA ACTTACGAAT 
CTTCATGTAA GAGACTAAAA CTTAATGCCT CGGGCAAAAG ATTTCCTTCA 
CCAACCAATG TTCAGAAACA TCCTTGTTAC AACGGAGTGG TTAAGACTGA 
TGCAAAAATA GAGTTTCTGT GTCAAGATAG CGGTATTAGA GGCTGTTGGT 
TTAGATGCAC TGTCCTGGAC GTATCAAGGA AACAGGTAAA ACTCCAGTAT 
GATGATATAG AGGACGAGGA TGGATATGGA AACCTTGAGG AATGGGTGCC 
GGCTTTTAAA TCTGCTATGC CTGACAAGCT TGGTATAAGG TTGTCCAACC 
GCCCAACAAT CCGACCTGCT CCTCGAGATG TTAAAACAGC ATACTTTGAT 
CTTACAATTG GTGAAGCTGT TGATACATGG TGGAATGATG GTTGGTGGGA 
AGGTGTTGTA ATTGCCACTG GCAAACCGGA TACTGAGGAC TTGAAAATAT 
ATATCGCTGG GGAGAACTTA TGCTTAACAG TGCTCAGAAA GGATATTCGG 
ATTTCCAGAG ACTGGGTGGG AGATAGCTGG GTTGATATCG ATCCTAAACC 
CGAAATACTC GCTATTGTAT CTTCTGATAG TAGCTCGGAA TCCAAGCTTT 
CCATGTTGTC CACTCTTTCA AAAGACACAA AGGCAAAACC CAGTGCTATG 
CCAAATATTG TTGAGGAGGC AGAACCTGAA GGTGAGAAAG CGTACAATTC 
CCTTTTAGGA GAACAGAACA AAGAGCATAA AGATGTGGTA GTTAAGGAAG 
ATGACGAAAA CAAACTTTCA AAAGAAGAGG ATAAAGAGGT TGGAAGTAAC 
GAAACTAAAA CCTATGTCAA CCATGAAAAT ACCGTGGAGG ACCACAAAGA 
AGATGATGTT ACCCTTAATG ATGAGAAGGC CCGCAAATCA GAATCAGTCT 
TCACCCTATC AAAAACTACT ACCACGCTGG TGACAACGTA AAGATGCTTG 
CTTGAAGTCA TACATAATGA TGGTAATTCT GGTACGTGCC ACATCTCTGG 
AAACGTTGAT GTTTCTTTTT ATGTATATAT ATAAATTGAC ATAGTTTGCA 
GAAAAAGTGA TTCTGGGTTT GACTTGGTTG GTGCTGAGGA GAGAGGAGTA 
GGTAAAGGTT GTATAGAAAA TTGAAGAGGC ATGATTTTGG TGGTTGCATT 
TGTTTTAACC AATCATCTAA GCATAGGATT CATTAGTACT GGTTGTTTTA 
GGTTTTATTT ATGCAATGTT TATTAGGAGA AAAGGATATC CATTTGTATT 
TTGCCTTATT GTCACAAAAC TCCATGTAAA ACCAAAAAAA AAA

Gene models with high sequence identity

  1. AT5G55600.1 [+] show detail - agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
HMMPfam Agenet 3.1e-17
HMMPfam Bromo adjacent homology (BAH) domain 3.6e-10
ProfileScan Bromo adjacent homology (BAH) domain 14.706
HMMSmart Bromo adjacent homology (BAH) domain 2.2e-07
HMMSmart Tudor-like, plant 2.5e-15

See the detailed result >

AT5G55600.1

Model type
Protein coding
Short Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein
Computational Description
agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein; FUNCTIONS IN: RNA binding, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tudor-like, plant (InterPro:IPR014002), Agenet (InterPro:IPR008395), Bromo adjacent homology (BAH) domain (InterPro:IPR001025); BEST Arabidopsis thaliana protein match is: agenet domain-containing protein / bromo-adjacent homology (BAH) domain-containing protein (TAIR:AT1G68580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-21-I15 introduced

  • F08929 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

1 mutant line founds