1. Home
  2. Full-length cDNAs
  3. RAFL16-28-F15

RAFL16-28-F15

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19585)

full reading [+] show sequence

Nucleotide sequence: RAFL16-28-F15 - full reading 
AATAATCGCT TCTTCTTCTT CTTCTTCTTC CTCAATCTCC CAATCGTCTC 
TTCCATCAAG CTCCCAACAA TGGCGACGGA GCTTAACCCT AAGAACTTCC 
CTGTTCTCTC TTATGTCTTG GATCGTCTCC CTTCATTCAC CGCCAAATCC 
TCTTCCTCTT CCGATGTCGA GCCACCACCA TCCAAATCCG ATCCTTCTTC 
ATCATCAAAC CACTCTATCG AGATAGTGAC TCAGATGCCT CACTTGGCTC 
ATCCTGATGT TCTTGCCTCC ATGACTAACG CAACCGCCGA CGTTTCTCAG 
ACCCGATCTG TTCTTCGAAC CCTAGGACCA AGACCCGATC ACGAAACCGT 
CGACAGAGCT CGTGCTAGGC TCCGTGAGAT CGACGCGTCT TTGTCGGAAT 
CTTTCGAAGA GATCGCTCTC TCTCCTAACG ATATTGACGT GGCGGAGAAG 
GAACAGAAGA GGAGAGAAGC TGTGGAGCAA GAGAAGATTT GGTATAAATC 
GATCCTTAAG CTTAACGAGC TTCATGAATC TTATGAGAAG CTTTTGAAAG 
AAGCAGAGGA GAGGCTCGTG AGGATCTATG AGTCTGCCGA GAAGAATGCT 
GCCGCGGTGG CGGAGGAGGA AGCTGCGGAG GTTGAAGTCA ATGAAGAGGT 
TGTGAGTATA CTGCAACAAG CTGCGGAGAA TCCATTGGAC CGAGTTGATT 
TGTCTGGTCG GAAATTGAAG TTGCTTCCTG AAGCATTTGG AAAGATTCAA 
GGTCTCCTTG TTCTTAATCT CTATAACAAT CAGCTTCAGG CTATTCCTGA 
TTCGATAGCT GGTTTGCATA ACCTTCTCGA ACTCGATGTT TCCACTAATT 
TCCTGGAGAC ATTACCAGAT TCGATCGGTT TATTGTCAAA GTTGAAGATT 
TTGAATGTCT CTTGTAACAA ACTCACAACT TTACCAGATT CCATCTGCCA 
TTGTGGATCG TTGGTTGTCT TGGATGCGAG CTACAACAAT CTCACCTACT 
TACCAACAAA CATCGGATTC GAGCTAGTGA AACTAGAGAA GCTCTTGATC 
CATCTCAACA AAATCAGATC ATTACCAACT TCCATTGGTG AAATGAGATC 
CTTACGCTAC CTCGATGCAC ACTTCAACGA ACTCAATGGT CTCCCAAATT 
CTTTCGGGCT GCTCACGAAC CTCGAGTACC TTAACCTGAG CAGTAACTTC 
AGCGATCTCC AAGATCTCCC TGCTTCATTC GGAGATCTCA TAAGCCTCCA 
AGAACTCGAC TTGAGCAACA ACCAGATCCA TTCTCTTCCA GACGCTTTTG 
GCACGCTCGT GAACTTGACC AAACTGAACT TGGACCAAAA CCCGCTTGTT 
GTCCCGCCTG ATGAAGTCGT GAAACAAGGT GTGGATGCGG TTAAAATGTA 
TATGGGTAAG AGATGGGTCA GCATGTTGGA AGAGGAAGAG AAGATGGCGA 
ATATGAAGGA TGAGATGGAT CAGACAAACA CCGATTGGCT CACCCGAACC 
ACCTCGAAGC TGAAAACGTA TGTTACTGAG GTCTCGGAGT ATCTTGGCTC 
GAATCCGCCT AGAGATCCTT ACCTTGACCA GCAGCTATGA AATGACTTTG 
AGCTTCATTT TACATTTTCG TGACGATATC TCAAGTATCA GTTTCCAAAG 
TGATCTTCAG TCTTGAGTTT TCCTGCCGCT GCTTCTCTGT TTCGGTATAT 
AGTTTTTTTT TCTCTTTTAT TTGCTTCTAC TCTTTACTGT TGTTTATTCG 
TATTTGTCTC ATAACATTTC ATTTATTTGT TTACCTTTTT TTTTCTTTTT 
TCTGAAAGAA TTTTATGTTC CTTCAACAAT TTTGAGAGAT GGTAACAGAA 
GTTCTTTTTT CAAGTTTAAA AAAGAAA

Gene models with high sequence identity

  1. AT5G05850.1 [+] show detail - plant intracellular ras group-related LRR 1
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
HMMPanther LEUCINE-RICH REPEAT-CONTAINING PROTEIN 4.4e-165
HMMSmart no description 53
HMMSmart Leucine-rich repeat, typical subtype 16
HMMSmart no description 4.6
HMMSmart Leucine-rich repeat, typical subtype 14
HMMSmart no description 0.0082
HMMSmart Leucine-rich repeat, typical subtype 0.01
HMMSmart no description 28
HMMSmart Leucine-rich repeat, typical subtype 120
HMMSmart no description 330
HMMSmart Leucine-rich repeat, typical subtype 57
HMMSmart no description 140
HMMSmart Leucine-rich repeat, typical subtype 17
HMMSmart no description 190
HMMSmart Leucine-rich repeat, typical subtype 54
HMMSmart no description 20
HMMSmart Leucine-rich repeat, typical subtype 0.0015
HMMSmart Leucine-rich repeat, typical subtype 45
Coil coiled-coil 0
Coil coiled-coil 0
HMMPfam Leucine-rich repeat 0.27
HMMPfam Leucine-rich repeat 0.013
HMMPfam Leucine-rich repeat 0.36
HMMPfam Leucine-rich repeat 0.14
HMMPfam Leucine-rich repeat 0.0014
Gene3D no description 5.9e-45
superfamily L domain-like 1e-58

See the detailed result >

AT5G05850.1

Model type
Protein coding
Short Description
plant intracellular ras group-related LRR 1
Curator Summary
Encodes PIRL1, a member of the Plant Intracellular Ras-group-related LRRs (Leucine rich repeat proteins). PIRLs are a distinct, plant-specific class of intracellular LRRs that likely mediate protein interactions, possibly in the context of signal transduction. PIRL1 (AT5G05850) and PIRL9 (AT3G11330) are genetically redundant and are required for differentiation of microspores into pollen.
Computational Description
plant intracellular ras group-related LRR 1 (PIRL1); INVOLVED IN: microgametogenesis, pollen development; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Leucine-rich repeat, typical subtype (InterPro:IPR003591), Leucine-rich repeat (InterPro:IPR001611); BEST Arabidopsis thaliana protein match is: plant intracellular ras group-related LRR 9 (TAIR:AT3G11330.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-28-F15 introduced

  • F19204 - rosette leaf::increased length / stem::increased thickness / stem::abnormal
  • F29151 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

9 mutant lines found