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RAFL16-28-P10

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88572)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL16-28-P10 - 5 prime EST 
AACCGAGTGT CGGTGAATTT TTTGAAACTT CTTCTCTTTT GCGGTTTCGT 
GTTCCACTCC TCTCTTCTTG GCCCACGTGT TCATCAATCT CTCCCTCCGC 
ATGTAATCGC TTCGCCGTCA ATATCACATC TTTCTTCTTC TTTATCTTTA 
AAATCTCTTT AGATCGATTC TTTTGTGGAT TCTTGAAATC TCCGGAGAAA 
ACCACTATGG AGACGGCGAC TGAAGTGGCC ACGGTGGTGT CAACTCCGGC 
GGTTACGGTT GCGGCGGTGG CGACGAGGAA GAGAGATAAG CCGTATAAAG 
GGATAAGGAT GAGGAAGTGG GGGAAGTGGG TGGCGGAGAT AAGAGAGCCT 
AATAAAAGGT CAAGGATCTG GCTTGGCTCT TACTCTACTC CTGAAGCGGC 
GGCGCGTGCT TACGACACGG CGGTGTTTTA TCTCCGAGGT CCTTCTGCTC 
GGCTTAACTT CCCGGAGCTT TTAGCCGGAG TGACGGTGAC GGGAGGAGGC 
GGAGGAGGAG TGAACGGTGG TGGAGATATG TCGGCGGCGT ATATAAGGAG 
AAAAGCGGCG GAGGTTGGAG CACAAGTGGA TGCNTTANAA GCGGCGGGGG 
CNGGA

Gene models with high sequence identity

  1. AT4G36900.1 [+] show detail - related to AP2 10
    E-value: 0; Score: 99.50

3 prime EST [+] show sequence

Nucleotide sequence: RAFL16-28-P10 - 3 prime EST 
GCAAAATGTA AATCTCACAA GTTAAAAACA ATCTAAACAC TACCAAGTTT 
TTACAGCTAC AAAACGTGTG AATAATCAAG CAACAGGAGG GATTGATTCA 
GCGATTGCAA GCGGCTCAAG AACAGGAGAA GAGTGAGCTC GTGCGGGTGG 
GCGAAAGAGA GAGAGAGAGA GAGAGAGAGA TGGAAAACGT TTCACTTGAG 
GACTTTGAAG CTGAAAAAGC CAAGAAACAA CGAAGGGGAA GAACATAGCA 
GCAAGTAAGA AGTTAATAAC AGGGCCGACC ATGCCAGATT CCTCGTGGCT 
CTGTCTGAGT TAGAGATTGT CCCGCAGCTG CTTGTGAATG TGTAGAAGCA 
GTGCTCTCCG GATTAGATTG TCCACCAGCC ACGTTTAGAG CCATTGCGCC 
GGATATCTCA CATGTCATGT TTCCTTTGAT CTTAAACCAA GTCTCAGCAA 
CACTT

Gene models with high sequence identity

  1. AT5G59000.1 [+] show detail - RING/FYVE/PHD zinc finger superfamily protein
    E-value: 0; Score: 97.99

AT4G36900.1

Model type
Protein coding
Short Description
related to AP2 10
Curator Summary
encodes a member of the DREB subfamily A-5 of ERF/AP2 transcription factor family (RAP2.10). The protein contains one AP2 domain. There are 16 members in this subfamily including RAP2.9 and RAP2.1.
Computational Description
related to AP2 10 (RAP2.10); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: DREB and EAR motif protein 3 (TAIR:AT2G23340.1); Has 5719 Blast hits to 5612 proteins in 252 species: Archae - 0; Bacteria - 2; Metazoa - 4; Fungi - 0; Plants - 5703; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G59000.1

Model type
Protein coding
Short Description
RING/FYVE/PHD zinc finger superfamily protein
Computational Description
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, RING-CH-type (InterPro:IPR011016); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G05830.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-28-P10 introduced

  • F00211 - Specific phenotypes were NOT observed.
  • F07821 - rosette leaf::decreased size / rosette leaf::abnormal / whole plant::decreased height / sporophyte vegetative stage::decreased speed / stem internode::decreased length / rosette leaf::desaturated green / rosette leaf::epinastic / rosette leaf::increased width / rosette leaf::abnormal / cauline leaf::desaturated green / cauline leaf::abnormal / fruit::decreased length / fruit::abnormal
  • F08245 - Specific phenotypes were NOT observed.
  • F14618 - Specific phenotypes were NOT observed.
  • F15427 - rosette leaf::decreased size / rosette leaf::increased width / whole plant::decreased height / stem::abnormal
  • F16023 - Specific phenotypes were NOT observed.
  • F22744 - Specific phenotypes were NOT observed.
  • F25815 - seed::increased size
  • F29623 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

11 mutant lines found

12 mutant lines found