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RAFL16-35-L09

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88576)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL16-35-L09 - 5 prime EST 
AACCGGCTGT CTGGAGAGTT TTTTTTTTTT TTATTTTTTT TTTTTTTTTT 
TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTTT TTTTAAAAAA 
AAAAAANNAA

Gene models with high sequence identity

Not founds.

3 prime EST [+] show sequence

Nucleotide sequence: RAFL16-35-L09 - 3 prime EST 
CAATGCCCAT CATATTGTAT ACAACTCTTC TAAATAAACA AAAGAGTTGT 
CTTCTAAATA ATCATCTGAC AGCTATCTTT GCAGTTCTGT GTAGATTCAA 
CCATAAATTT AAAACCAAAT TTCGATCTTT GCAATAATAA TTCACATGCT 
AAGAAACAGG CAATTGCATT ATCAAAAATT CGA

Gene models with high sequence identity

  1. AT5G02820.1 [+] show detail - Spo11/DNA topoisomerase VI, subunit A protein
    E-value: 7e-93; Score: 98.91

AT5G02820.1

Model type
Protein coding
Short Description
Spo11/DNA topoisomerase VI, subunit A protein
Curator Summary
Involved in the patterning and shape of leaf trichomes. Encodes the DNA topoisomerase VI SPO11-3, involved in endoreduplication
Computational Description
ROOT HAIRLESS 2 (RHL2); CONTAINS InterPro DOMAIN/s: Spo11/DNA topoisomerase VI, subunit A, N-terminal (InterPro:IPR013049), DNA topoisomerase VI, subunit A (InterPro:IPR004085), Spo11/DNA topoisomerase VI, subunit A (InterPro:IPR002815); BEST Arabidopsis thaliana protein match is: Spo11/DNA topoisomerase VI, subunit A protein (TAIR:AT3G13170.1); Has 936 Blast hits to 932 proteins in 314 species: Archae - 223; Bacteria - 16; Metazoa - 170; Fungi - 119; Plants - 152; Viruses - 0; Other Eukaryotes - 256 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-35-L09 introduced

  • F03238 - Specific phenotypes were NOT observed.
  • F08506 - Specific phenotypes were NOT observed.
  • F08507 - seed::increased size
  • F12624 - Specific phenotypes were NOT observed.
  • F13234 - Specific phenotypes were NOT observed.
  • F14901 - Specific phenotypes were NOT observed.
  • F15018 - rosette leaf::decreased size / rosette leaf::upturned / rosette leaf::increased width / cauline leaf::epinastic / whole plant::decreased height / stem::present in fewer numbers in organism
  • F15106 - Specific phenotypes were NOT observed.
  • F15438 - Specific phenotypes were NOT observed.
  • F16029 - rosette leaf::decreased size / rosette leaf::abnormal / rosette leaf::decreased width / cauline leaf::decreased size / stem::abnormal / stem internode::decreased length / stem::decreased thickness / stem::abnormal / stem internode::decreased length
  • F16502 - Specific phenotypes were NOT observed.
  • F16923 - Specific phenotypes were NOT observed.
  • F17116 - Specific phenotypes were NOT observed.
  • F17533 - Specific phenotypes were NOT observed.
  • F21115 - rosette leaf::abnormal / stem::abnormal / whole plant::decreased height / fruit::increased length / stem::abnormal / stem internode::decreased length

Mutant lines with disrupted or induced

15 mutant lines found