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RAFL16-35-L12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pdz88577)

5 prime EST [+] show sequence

Nucleotide sequence: RAFL16-35-L12 - 5 prime EST 
ATCAATGGCG TCTGCAACGA CTCTTCTCTT CCACCACGGT TCCACTCGAG 
TCCTCGTCGC TCGTAGACGG TGCCAAGCTT CAGTCCTTAG ACCCTACGGC 
GGTTTAAAGC CCTTTCTTTC CTTCTGCAGC TTACCTAACT CCACTGCGCC 
GTTCCGGGAT TCGTTGAGAG CAAAATCCGA TGGATTGGCT CGGGCCTATG 
TTACCGGAGC GCCGCCTATC GTGGAAGAAC CAGACCCAAA GATTGAAGAA 
TCCAAATCTG AGGCTGAATC GAAGGATTTA ATTAGTTGGG GGCTTCTGTG 
GAGCTTGATG AGCAAGCACA AGCTCAGGCT CAGTGTTTGC TTATTGACTC 
TCCTTGGATG CAGTACTTGC ACTCTCTCTA TGCCTGTTTT TTCTGGTAGA 
TTCTTTGAAG TACTGATTGG GGTGAGACCG GAGCCTTTGT GGCGGCTGCT 
GAGCAAAATT GCTGNTTTGT ACTCGTTGGA ACCCATCTTT ACTATTGCTT 
TTTGTGACCA ACATGACTGC TATCTGGGAA AACNTTATGG CAATATTAAN 
AGCTCA

Gene models with high sequence identity

  1. AT4G25450.2 [+] show detail - non-intrinsic ABC protein 8
    E-value: 0; Score: 99.28

3 prime EST [+] show sequence

Nucleotide sequence: RAFL16-35-L12 - 3 prime EST 
AAACTATTGT TAATCAAAGT TGTATATAAA ACCAGATTCT ACCATTTGTA 
ATTTTGTAGT AATTTGTTAC AAATTACACC GAGTTAAGGT AAATTACTCA 
AAGGCTAGCT CTCTGAGTGC CAACAAGTGA AGCATATGAT CCCTTTTGCG 
CTACAATTCG GAATGTGTTC CAAGCTCTAT GATCTTCCCA TCAGAGCACA 
CAGCGATCTG ATTCGCGCTC TGAACTGTGC TCAGTCTGTG AGCGATGACT 
AATGTTGTCC TGTCTTTCAT CAGACGGTTC AACGCACTCT GGACTAACCG 
CTCGCTCACT GGATCCAGCG CACTTGTGGC CTCATCGAGA ATCAAGATGG 
GGGCATTCTT CAGCAGAGAT CGGGCTATGG CAACTCTCTG TCGTTGTCCT 
CCGCTAAGCA AGCCTCCT

Gene models with high sequence identity

  1. AT4G25450.3 [+] show detail - non-intrinsic ABC protein 8
    E-value: 0; Score: 99.28

AT4G25450.2

Model type
Protein coding
Short Description
non-intrinsic ABC protein 8
Curator Summary
member of NAP subfamily
Computational Description
non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ABC transporter-like (InterPro:IPR003439), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain (InterPro:IPR001140); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G25450.3

Model type
Protein coding
Short Description
non-intrinsic ABC protein 8
Curator Summary
member of NAP subfamily
Computational Description
non-intrinsic ABC protein 8 (NAP8); FUNCTIONS IN: ATPase activity, coupled to transmembrane movement of substances, transporter activity; INVOLVED IN: transport, transmembrane transport; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439), ABC transporter integral membrane type 1 (InterPro:IPR017940), ABC transporter, transmembrane domain, type 1 (InterPro:IPR011527), ABC transporter, transmembrane domain (InterPro:IPR001140), ABC transporter, conserved site (InterPro:IPR017871); BEST Arabidopsis thaliana protein match is: transporter associated with antigen processing protein 2 (TAIR:AT5G39040.1); Has 420091 Blast hits to 380969 proteins in 4118 species: Archae - 7380; Bacteria - 326284; Metazoa - 9897; Fungi - 7311; Plants - 5559; Viruses - 14; Other Eukaryotes - 63646 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-35-L12 introduced

  • F23040 - seed::increased size / seed::increased length
  • F29138 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

2 mutant lines found