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RAFL16-37-J01

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19700)

full reading [+] show sequence

Nucleotide sequence: RAFL16-37-J01 - full reading 
CTCGATCAAT TATCCATTTT GCCCAGATTT TTTCCAGAAG CTCATCGAAT 
TCATTATAAG AGTTATGGAG AATGGTGGTC AGTATGATAA TGCGCGGTTC 
AAGCCCGATT ACTTCAAAGG TGCACAATCT ATGTGGAATA TGATTCCCCA 
GCATCAGATT AAGGAACAAC ATAATGCGTT GGTGATGAAT AAGAAGATCA 
TGTCCATCCT TGCTGAGAGA GACGCTGCTG TACATGAAAG AAATCAAGCT 
GTCTCTGCTA AAAAGGAAGC TGTCGCTGCT CGGGACGAAG CGCTTCAGCA 
ACGTGACAAA GCTCTTTCTG AGAGAGATAA AGCTTTGATA GAGAGAGATA 
ATGCTTATGC TGCTCTTCAA CACCATGAAA ATAGTCTCAA CTTTGCTTTG 
TCTGGTGGGA AGTGTGTTGA TGGAGATGAT TGTTTTGGTA TTGGGGAACC 
CCACAAACTT GAAGTCTTCC CTTTGTCAAC TATTCCGCCT GAGGTTACAA 
ACACGAAGGT GGTGAACAAA AGGAAGAAAG AGAACAAGCA GGGACTATCA 
AAGGTGAAAA AAGTGGGTGA AGATCTGAAC CGTCGAGTTC CTGCTCCTGG 
AAAGAAATCT AGAACAGATT GGGACAGTCA AGATGTCGGT TTGAACTTAG 
TCACCTTCGA TGAGACGACA ATGCCTGTAC CCATGTGTTC GTGCACAGGC 
TCTACGCGTC AGTGTTACAA ATGGGGAAAT GGCGGCTGGC AATCGTCTTG 
CTGCACAACC ACCTTATCCC AGTATCCATT ACCGCAGATG CCAAACAAGA 
GGCATTCTCG GATGGGCGGT AGGAAAATGA GCGGAAACGT TTTCTCGAGA 
TTACTCAGCC GTTTATCAGC AGAAGGATAT GATCTCTCGT GTCCTGTTGA 
TCTTAAAGAC TATTGGGCTA GGCACGGGAC AAACCGCTAC ATCACTATCA 
AGTAGCCTCT GTTGTTTACA CAGTCCAAGT ATGTTTCTCT CGTCTTCTTA 
AGATTAGGTG TTGTCTTTGT CTTTATTGTC CATAGTTTGT TCTTTGTTGT 
GTATGGTAAA ACCATTGTTA TGTGTATCTT TTGGATGGGC AAAAATGGTT 
TGCATAAAAA ATCTGTGTTT TGACCTCAAA AAATAAAATA AAATCGTAAC 
AGTTAAA

Gene models with high sequence identity

  1. AT2G21240.2 [+] show detail - basic pentacysteine 4
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMPfam GAGA binding-like 4.7e-108
Coil coiled-coil 0

See the detailed result >

AT2G21240.2

Model type
Protein coding
Short Description
basic pentacysteine 4
Computational Description
basic pentacysteine 4 (BPC4); CONTAINS InterPro DOMAIN/s: GAGA binding-like (InterPro:IPR010409); BEST Arabidopsis thaliana protein match is: basic pentacysteine 5 (TAIR:AT4G38910.2); Has 263 Blast hits to 247 proteins in 33 species: Archae - 0; Bacteria - 2; Metazoa - 40; Fungi - 0; Plants - 219; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-37-J01 introduced

  • F14722 - Specific phenotypes were NOT observed.
  • F29420 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

2 mutant lines found