1. Home
  2. Full-length cDNAs
  3. RAFL16-43-C08

RAFL16-43-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19756)

full reading [+] show sequence

Nucleotide sequence: RAFL16-43-C08 - full reading
ACTTTTTCCT TCAATCTCTC TTCTCGCTGA CGACTTGGAA ATAAAGTGAG 
GGAAAATATT CCTCCAACTT CACTTTCCTG AGAATCTGCA AATAAAGCAA
TTCAACTTCC TTTTCTTTCT TTCTAAATGA AATTTCGTTC TTTGTCTCAG
TCTCTCTCTC TTTCTTCGGT CGAGTCCGAT CAAAATTGAA AACCCATTGA
GTTCCTCGCC AAAAGGTGAA ATTTGAGAGA ATGAATCAAC GAGAGAAGCT
GATTGTTGGT GAAATGTTTG GAGAGTTTCT GTAAATAGAC GCCTCGGATT
TGGCATTGTT AGTGAAGGTT AAAGGAGTTT CCTAGAAGTT TCAAAGCAAT
TTGCCTCCAA GTTCTTGACT TATAAAACAT ATTGGAACTA ACATTTCAAG
AAAGAAGAGA AGGAGATGGG CTGTGTTTCT TCTTGCTTTG GGGTCGATGA
CTTTGAGGAT TACCCCAATC CAAGTAGTTC TGTTAACAGA AGCTGCCCAT
GCCCGAGATG TCTTGTTAAC AACTTCCTTA ACCTGTATAT CTCTTTATTC
AGAAGAGGCG AAACCCGCTC TCTCCCATCC TCCTTACAGG CTACTAATGT
ATCGATAGCT ACATCAACTT CGTATGATAA CTTTATGTCT AATACATTCC
ATTCTACTCC AAGGCCTCTG CCTTATGACG CTGATCCAAG ATACTTCCGG
TCAAGGCGTG ATTCGCTTGT TTCTAGACGC GATAAGGGTT CAAGTCATTC
TCATGAGGAA GCTGAGCCCT TAAGAAGTGA TGCTGATGTG GATTCTGAGT
CTTTCTCAGT GGAAGGAAGC AAATGGGCTA ACAAGCTTAT TATCTCTGGT
GAAGATTCCA AAGAAGAGTT CTCTAGATCC TCTCGGAGGA TTCTTCAGTC
AAGGACAATG TCTACTAGTA ACGAAGGCCT GTATATAACA TCTGATGATG
AAGATGTCTG TCCAACGTGT CTTGAAGAAT ACATATCAGA GAACCCGAAG
ATTGTTACAA AGTGTTCTCA CCATTTCCAC CTCAGTTGCA TTTATGAATG
GATGGAGAGA AGTGAAAACT GCCCTGTTTG TGGAAAGGTG ATGGAGTTCC
ACGAAACACC GTAACTTGTT GCCATTGATC CTGTCTTGTA CTGCCTAGAC
CGGACCTGGG GAGATTGACA AGGCAGCAGA GAGATGTGAA TATATTTTTT
AACAATATAT GATATTGTAT ATGATGGGGA AATGAGGAAA CGTCTCTCTG
CACGTTTGGC TTATGGAGTT CTGAGGAAAC CCTCTTGAGA GAAAACAACA
GCAGCAGCAG AACAGATGCA CACAGGAATC TGACATGTTT CTTAGGATTT
GCCTTTGGCG CAGTGTTTTG TTCAAGGCAT GAAACTTTTT ACATCATTTT
GTATGATTAC TTTTAACCTT TTATGAATTT ATGAATATAT ATGTGATGCT
TGTATTTTGG CATATAGTTT ACATTGGGTA TTTGGGTCAA GGAGAGATCA
CATTGTAACC CAAATGTTTC TCATTACATG ATAATAAACC AGTGTCATGG
TTCAGTGTTA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G15790.2 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 0.000000000000023
Gene3D no description 0.00000000029
HMMPfam Zinc finger, C3HC4 RING-type 0.00000025
HMMPanther RING FINGER PROTEIN 24-RELATED 0.000000019
HMMSmart Zinc finger, RING-type 0.000003
ProfileScan Zinc finger, RING-type 12.047

See the detailed result >

AT5G15790.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-43-C08 introduced

  • F25101 - Specific phenotypes were NOT observed.
  • F29033 - seed::decreased size

Mutant lines with disrupted or induced

3 mutant lines found