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  3. RAFL16-43-C08

RAFL16-43-C08

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19756)

full reading [+] show sequence

Nucleotide sequence: RAFL16-43-C08 - full reading 
ACTTTTTCCT TCAATCTCTC TTCTCGCTGA CGACTTGGAA ATAAAGTGAG 
GGAAAATATT CCTCCAACTT CACTTTCCTG AGAATCTGCA AATAAAGCAA 
TTCAACTTCC TTTTCTTTCT TTCTAAATGA AATTTCGTTC TTTGTCTCAG 
TCTCTCTCTC TTTCTTCGGT CGAGTCCGAT CAAAATTGAA AACCCATTGA 
GTTCCTCGCC AAAAGGTGAA ATTTGAGAGA ATGAATCAAC GAGAGAAGCT 
GATTGTTGGT GAAATGTTTG GAGAGTTTCT GTAAATAGAC GCCTCGGATT 
TGGCATTGTT AGTGAAGGTT AAAGGAGTTT CCTAGAAGTT TCAAAGCAAT 
TTGCCTCCAA GTTCTTGACT TATAAAACAT ATTGGAACTA ACATTTCAAG 
AAAGAAGAGA AGGAGATGGG CTGTGTTTCT TCTTGCTTTG GGGTCGATGA 
CTTTGAGGAT TACCCCAATC CAAGTAGTTC TGTTAACAGA AGCTGCCCAT 
GCCCGAGATG TCTTGTTAAC AACTTCCTTA ACCTGTATAT CTCTTTATTC 
AGAAGAGGCG AAACCCGCTC TCTCCCATCC TCCTTACAGG CTACTAATGT 
ATCGATAGCT ACATCAACTT CGTATGATAA CTTTATGTCT AATACATTCC 
ATTCTACTCC AAGGCCTCTG CCTTATGACG CTGATCCAAG ATACTTCCGG 
TCAAGGCGTG ATTCGCTTGT TTCTAGACGC GATAAGGGTT CAAGTCATTC 
TCATGAGGAA GCTGAGCCCT TAAGAAGTGA TGCTGATGTG GATTCTGAGT 
CTTTCTCAGT GGAAGGAAGC AAATGGGCTA ACAAGCTTAT TATCTCTGGT 
GAAGATTCCA AAGAAGAGTT CTCTAGATCC TCTCGGAGGA TTCTTCAGTC 
AAGGACAATG TCTACTAGTA ACGAAGGCCT GTATATAACA TCTGATGATG 
AAGATGTCTG TCCAACGTGT CTTGAAGAAT ACATATCAGA GAACCCGAAG 
ATTGTTACAA AGTGTTCTCA CCATTTCCAC CTCAGTTGCA TTTATGAATG 
GATGGAGAGA AGTGAAAACT GCCCTGTTTG TGGAAAGGTG ATGGAGTTCC 
ACGAAACACC GTAACTTGTT GCCATTGATC CTGTCTTGTA CTGCCTAGAC 
CGGACCTGGG GAGATTGACA AGGCAGCAGA GAGATGTGAA TATATTTTTT 
AACAATATAT GATATTGTAT ATGATGGGGA AATGAGGAAA CGTCTCTCTG 
CACGTTTGGC TTATGGAGTT CTGAGGAAAC CCTCTTGAGA GAAAACAACA 
GCAGCAGCAG AACAGATGCA CACAGGAATC TGACATGTTT CTTAGGATTT 
GCCTTTGGCG CAGTGTTTTG TTCAAGGCAT GAAACTTTTT ACATCATTTT 
GTATGATTAC TTTTAACCTT TTATGAATTT ATGAATATAT ATGTGATGCT 
TGTATTTTGG CATATAGTTT ACATTGGGTA TTTGGGTCAA GGAGAGATCA 
CATTGTAACC CAAATGTTTC TCATTACATG ATAATAAACC AGTGTCATGG 
TTCAGTGTTA AAAAAAAAA

Gene models with high sequence identity

  1. AT5G15790.2 [+] show detail - RING/U-box superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
superfamily RING/U-box 2.3e-14
Gene3D no description 2.9e-10
HMMPfam Zinc finger, C3HC4 RING-type 2.5e-07
HMMPanther RING FINGER PROTEIN 24-RELATED 1.9e-08
HMMSmart Zinc finger, RING-type 3e-06
ProfileScan Zinc finger, RING-type 12.047

See the detailed result >

AT5G15790.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT3G02290.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-43-C08 introduced

  • F25101 - Specific phenotypes were NOT observed.
  • F29033 - seed::decreased size

Mutant lines with disrupted or induced

3 mutant lines found