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  3. RAFL16-46-G17

RAFL16-46-G17

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19783)

full reading [+] show sequence

Nucleotide sequence: RAFL16-46-G17 - full reading 
GTTGGATCCA ACAAATCCTC AGCAAGATTC TCCAGTCTCT TACCAAAGTC 
TTTCATGGCC GTCCTGTATT CATCAGACAC ATCTGAAATG TCATTGAGAT 
TGGATTGAGG GAGGTGACGA ACGTAGAAAG TGCTTTCCCA ATCGACATCT 
TCGACTTCTG TCTCAAGATT ATCCAAACCT TTGGACTTGA GCATGTCATT 
GAACTTTTGT TCTTGGCATG TCTTGTAATG GTCCTTTGTC ATCTTCTCGA 
TCTTGTCCAT TAAGTCATGT GGTAATCCAT GGTTCACTAT CTCAAAGAAG 
CCCCAATTCT CACAAGCTTC ATTGATTAGA GCCATGGTTT GGTCTCTCTC 
TTCCCCATTG AGCTTGGACA AGTCTACTAC TGGAAACTTC ATGCTCTTCT 
CCATCTTTCT TTCTCTCTCT CTTCTTCGAA AGTAATCTAT TTGAAGTTAC 
AAGTTGTGTA TTTGTTAATT GCTTTCAGGT TCTCGAGAAC CGGTCTCCGA 
CTTTGCTCCA TCAAGTTGCT CTGTTGTTTT AGTCGGAAAC CAAAGAAAAC 
CGCATAAAGA TTGTTACTCT GACTCCGCGA TTTCTCTAGA CATAAATAGT 
GAGAAGTATT CACCACGTAG TGTACTAAAC ACTTTATCAA GAGATTCACT 
TAGCTCTTCA GGCGATGATG CTTCAAGCTT CAATGGTTCA ATGGTCTCTT 
CTAGCTTCGC TTCGCCTTCA GACAAACCGA AGCATAAGTC AATCTCTCCT 
TACAAATTCA TATCTTCTCT TATCATGAAT TCTCCTCTGA GGAAATGGAG 
AGGAAGTGAG ACTAAGAACA AGCCCAAACC TCAGCCTCTA ATTCAATGCT 
TCACTTACAA CGAGATTTCA AAGGCCACAA ATGATTTTCA CCAAGGGAAT 
ATAGTAGGCA TAGGAGGCTA CTCTGAAGTG TACAGAGGAG ATTTATGGGA 
TGGAAGAAGA ATAGCAGTGA AGAGATTAGC CAAGGAGAGT GGTGACATGA 
ACAAGGAGAA AGAGTTTCTT ACGGAACTTG GCATCATAAG TCATGTCTCT 
CATCCCAACA CTGCTCTTCT CTTAGGTTGT TGTGTTGAGA AAGGTCTTTA 
TCTTGTCTTC AGATTCTCCG AGAATGGAAC CTTGTACTCT GCGCTGCACG 
AGAATGAGAA TGGGTCGTTA GATTGGCCTG TACGGTACAA AATTGCGGTT 
GGAGTTGCTC GAGGGCTTCA TTATCTTCAC AAACGCTGCA ACCACCGGAT 
CATTCACCGC GACATTAAAT CTTCCAATGT TTTACTTGGA CCTGATTACG 
AACCGCAGAT AACTGATTTT GGATTGGCCA AATGGTTGCC TAACAAATGG 
ACTCACCATG CGGTTATACC GGTTGAAGGA ACGTTTGGTT ATCTAGCTCC 
AGAGTCCTTA ATGCAAGGAA CCATCGACGA GAAAACCGAC ATCTACGCAT 
TCGGCATTCT CCTTCTAGAG ATCATAACTG GTCGAAGACC GGTTAATCCC 
ACTCAGAAAC ACATTCTCTT ATGGGCAAAG CCGGCGATGG AGACAGGTAA 
CACAAGTGAG TTGGTTGATC CGAAATTGCA AGATAAGTAC GACGACCAAC 
AGATGAACAA GCTAGTCCTT ACAGCTTCAC ATTGTGTTCA ACAATCTCCG 
ATATTACGAC CAACCATGAC TCAGGTATTG GAGTTGCTTA CAAATGGGAA 
CGAGGCTGAG ATTGCAAAGA GCTGGAGAAT GCCTAAGGAT ATGACTAATG 
ACGATGATGA TAATAATGAA TGGGATGATT ATTCTATGAT TTTCGGATAT 
GATGTTCCTT CAGATTCTTC TTTTTAATAT TTTTGTTTAT ATCTAATATT 
TACTGATTGC TTTTGTTTAG GTTTTTCTTT TTCATTCTTT TATATGTTAT 
GAGATCTTTA ACGTTATGTA TCAAGAATTC ACAACTAATA GAAATAAGTT 
ACTTTACCAA AAAAAAAA

Gene models with high sequence identity

  1. AT5G57670.2 [+] show detail - Protein kinase superfamily protein
    E-value: 0; Score: 100.00

 

InterPro Scan Digest

Program Description E-value
HMMSmart Serine/threonine-protein kinase domain 6.7e-26
HMMSmart Tyrosine-protein kinase, catalytic domain 1.7e-16
HMMPanther 1-AMINOCYCLOPROPANE-1-CARBOXYLATE OXIDASE 5e-52
HMMPanther IRON/ASCORBATE-DEPENDENT OXIDOREDUCTASE FAMIL 5e-52
HMMPanther SERINE/THREONINE PROTEIN KINASE-RELATED 8.5e-213
HMMPanther SERINE-THREONINE PROTEIN KINASE, PLANT-TYPE 8.5e-213
PatternScan Protein kinase, ATP binding site 0
PatternScan Serine/threonine-protein kinase, active site 0
superfamily Protein kinase-like domain 1.2e-75
superfamily Clavaminate synthase-like 4.4e-20
HMMPfam Serine/threonine-protein kinase-like domain 2.3e-45
Gene3D no description 6.1e-16
Gene3D no description 1.3e-49
Gene3D no description 7.3e-18
ProfileScan Protein kinase, catalytic domain 36.499

See the detailed result >

AT5G57670.2

Model type
Protein coding
Short Description
Protein kinase superfamily protein
Computational Description
Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; EXPRESSED IN: petal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT2G18890.1); Has 113420 Blast hits to 112131 proteins in 3664 species: Archae - 114; Bacteria - 13552; Metazoa - 41580; Fungi - 9353; Plants - 32095; Viruses - 456; Other Eukaryotes - 16270 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-46-G17 introduced

  • F24315 - Specific phenotypes were NOT observed.

Mutant lines with disrupted or induced

3 mutant lines found