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  3. RAFL16-49-I12

RAFL16-49-I12

RIKEN Arabidopsis Full-length cDNAs

Resource: (pda19816)

full reading [+] show sequence

Nucleotide sequence: RAFL16-49-I12 - full reading 
CTGGTTCTTG ATTTGGAGTT TCTCTGACTC TGTTTTGACT ACTTTGGATT 
TAAGCTCGTT GATGTAAGCG ATTGCGTCAC CGAGTAACGA AGCTTTATCC 
ATTTTTGAAA CGTTTGGTAC AACCGCTCGT AACGCGTAGA ATCTTTGGTT 
TAGTTTCTCG CGTCTTTGTC TCTCTGCTTC GACGTGGTTT AGTGGCTCTT 
CTCTACCGTT TGCTGGCTTT CTTCCTCGTT TCTTTGGACG TTTCTCTACT 
GCTACTTCTT TCACGACGGA AGCTTCTAGA TCGGAGTGAT CTGATTCTCC 
GGCGGTTTTA TCTCCGAATG ATAGAACTTT ATCTTCGTTC AAAACCATCG 
ACCTCTTTCT TTTGTTTTCG AATTGTGTTT GACCCGAATA AGAACTTGGA 
TCCGGGTTTC CGGAGCTTCG TTTACCTTCA TCGCCGAAGT TTAATATCTC 
GCCGGATCTT GGTTTCACTA AAGTAGAACT TGACGTCGAA AAATTAAGTT 
CTCGGGAGAA AGTGTTATTG AATTTCGGAT TCTGGGTCTG AGAATGAACC 
GGACTCGGAG TCGGATCCAG ATTCGGGTTT TCGGTTATTG TGCTTGAGCT 
ACCGTTCTCA AACTGAATAG ACTTTGAAAA AAGCTGGGAG CTAGAACTTG 
GAGCTCCGTT ACCCGGTTCG TTAGATCCAG GTGTTCCAAT CGGGTCATTA 
ATCCACATAG ACGGGTCGTT CTCACCTTGA TCCGGGTCAA GATTCCAATT 
AAGACCCGAT AAATCTCCAG CTCCGCCGTC GAAATTGAAA AGAATTCGAA 
CCTTGTTAAT AAGGTCCGAA CTCTGTCGGA TCGGCTCCGT TGACCCGACT 
TCCACAACTC CGTTCGCCGA AGGAATACAC GCAATAGTAT GCATCCCAAA 
CACTCCTCCT TGCTTAGCCC GTTCACAACC CGACCCGGAT AATTGATCTG 
ACCCGGAAAC CCAAACCGCG TTACCCGTTG CAAACGCTTT ACCAGCTAAT 
CCCGCACCGC AAGCGAAGCT CTGCGTCATC GAAACCAAGA AAAACCATTC 
CGTATCCGTC ACCTCCTCAT CAACAGCGTC ATCCGACGGA GCAACACCAC 
CGGAGATCAA CGAGTTAAGC TCTCTCAACA CTTTTTTCCT GTACTCCTGA 
TCCGCCGGAG TAGAAAACGG CGGCGAACTC GATCTCCGTC TCGGGTTTGC 
TTTATCTTCT TCACCTTTGT AATAACCATC TCCCCATCCG AGCACGGAGG 
CGCCGGAGAA ATCATACGAC GGTTGCCAGA ATATAGCGTA GGTCCAACCT 
TCGTGTGTTC CTTCAATCAA AGCTTGTAAA CGTTGCTGAA GAGTCTCTTG 
ATTAAATCCC GCCTGTGCCG GAATCTCCAT CGCCGGCGTC GGAGTTGTTT 
CAGTCGTCGC CGTCGTGGTT GTCGTCGACG CCGGAGGCCA TAAAGTTGAG 
ATATCGGAAG AGCTCATGAA AGCTTCCATC ATAGAAGCGT TGTCGTCGGT 
GGTCCAAAGA TTCATCGTTG GTTGTAGCCG GTAATCAGTC ATTCCATAAA 
CCGGTGACCG GTAAAAAAAA AACACGTTTT TAATGAGAGA GAGAGAGATA 
GGAGAAAGTC TTCGTAGTCG GTTCTCGAGA ACCGTGGTAG CAACAGCATT 
GCCTTCTTTC AAAAGAACCT TAAACACAAA TCCAAACACT TCTCTTGTAA 
TCTTACGAGC TTCAACAACC AATACCCTTC TCGATTTCCC AAAAAACGCA 
AGCAACACAA CCACCGATAT CCAGATCACC ATAACCGCCG GAACCGCAAC 
CGCAGCCGCC GCAACCATCG ACATGGCTCC AAACACAGCT CCTAACACCA 
CAGACGCGTA AACCGCCGGT AATCTTGACG GAGACGGCGA TGACGTGTAC 
TGGAGCTTGT ACCAGCTAAG CACAGATGTG AGAAAGTTCC ATGAGGAAGC 
CAGGAGAATC GCGTAGACAG CTACAAAGAG ACAAACCCAT GTCCGTCTCT 
TGCTCATGAT TCGCATAAAG ATAAGGTACG ATCTTGGAGG AGAGCCATTC 
GATGTTCTTG GCGATCCTGT TGGATCCATC ATCGGCGATC TGATTGAGAT 
TTTTTATTGA GGGATTTTTT CTTTCTTTGT GTTGGAAATT GAAATCTCCG 
TGATTTGAGA TTTGTGCTGA AGAACTAGAA GAAGAAGAAG AAGAAGAAGA 
AGAAGAGAGA GAGCACAAAA AAAAAAGTGA AAGTCTTCAG ATTTGGGGAA 
AATAGATTAG TTCACGTGAG TCCCACTCTC ATGTTAAAGC GCGTGTTAAT 
CACTCGTTGG TTTAGAGGCT TGTAGTGGAG TACACGCGCT TAAGTTTCGT 
TTTATTTATT GATTTCCCCC AAAAGAGACC AGACATGGAA ATTAGGAACA 
AATGAATATA CATGGAAACT GCGTGAACTC ACTCTGATCA AAAATATTAT 
TATTTCCAAA AAAAAAA

Gene models with high sequence identity

  1. AT1G32640.1 [+] show detail - Basic helix-loop-helix (bHLH) DNA-binding family protein
    E-value: 0; Score: 99.94

 

InterPro Scan Digest

Program Description E-value
Gene3D Helix-loop-helix DNA-binding 2.3e-09
Coil coiled-coil 0
HMMSmart Helix-loop-helix DNA-binding domain 8.2e-16
superfamily Helix-loop-helix DNA-binding 1.9e-15
ProfileScan Helix-loop-helix DNA-binding domain 14.281
HMMPfam Helix-loop-helix DNA-binding domain 4e-10
HMMPanther MYC 1.6e-06

See the detailed result >

AT1G32640.1

Model type
Protein coding
Short Description
Basic helix-loop-helix (bHLH) DNA-binding family protein
Curator Summary
Encodes a MYC-related transcriptional activator with a typical DNA binding domain of a basic helix-loop-helix leucine zipper motif. Binds to an extended G-Box promoter motif. Its transcription is induced by dehydration stress and ABA treatment. Negative regulator of blue light
Computational Description
MYC2; FUNCTIONS IN: DNA binding, transcription activator activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: in 13 processes; LOCATED IN: nucleus; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: Basic helix-loop-helix (bHLH) DNA-binding family protein (TAIR:AT4G17880.1); Has 4078 Blast hits to 3762 proteins in 672 species: Archae - 2; Bacteria - 2; Metazoa - 761; Fungi - 108; Plants - 3150; Viruses - 25; Other Eukaryotes - 30 (source: NCBI BLink).
Link
InterPro Scan - TAIR

Mutant lines with RAFL16-49-I12 introduced

  • F23219 - seed::increased size / seed::increased length

Mutant lines with disrupted or induced

6 mutant lines found